PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000038G2070
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 298aa    MW: 32349.4 Da    PI: 8.3279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000038G2070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.63e-15100151155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  PH01000038G2070 100 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 151
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.43E-1598155No hitNo description
Gene3DG3DSA:4.10.280.101.4E-1498155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1899165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.50199150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-12100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MALEAVVFAQ GHFGYGSCRD SPYALAPWCD VGGSGFGEFC GDYWDHQLAA SVVPSAEEWE  60
AVSRDQSDAS TEGKQPAAAA GRRKRRRTKV AKNKEEIESQ RMTHIAVERN RRRQMNEYLA  120
VLRSLMPPSY AQRGDQASIV GGAINYVKEL EQLLQSLEVQ KSLKNRAGRT DAGHSPFAGF  180
FSFPQFSTSS HGGCGASISG NASNVTMVES HASLKVLARR RPKQLLKLVT GLQQLRIPPL  240
HLNMTTVDAM VLYSFSLKVE DDSKLGSVED IATAVHEILG SIQRQEESGL SSASSST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18286RKRRR
28287RKRRRT
3100111RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000038G2070
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075552e-99AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
GenBankHQ8588662e-99HQ858866.1 Oryza sativa Japonica Group isolate UT1675 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649528.11e-141PREDICTED: transcription factor bHLH96-like
RefseqXP_015629273.11e-141transcription factor bHLH96
SwissprotQ9C7T42e-82BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0A9F3U91e-144A0A0A9F3U9_ARUDO; Uncharacterized protein
STRINGOPUNC03G06240.11e-141(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-67bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]