PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000039G0930
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 301aa    MW: 32963.1 Da    PI: 9.8107
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000039G0930genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rW  +E+  l  +v+++G g+W+tI +          R+  ++k++w++
  PH01000039G0930  5 KQRWNSDEEAALRAGVAKHGVGNWRTILKDPKfsstlRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.763161IPR017930Myb domain
SuperFamilySSF466893.12E-14258IPR009057Homeodomain-like
SMARTSM007172.0E-6459IPR001005SANT/Myb domain
PfamPF002499.3E-7555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-12555IPR009057Homeodomain-like
CDDcd116602.58E-18657No hitNo description
Gene3DG3DSA:1.10.10.104.4E-18119192IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.1E-13120185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.54E-17120196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.453122190IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-10123183IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGAPKQRWNS DEEAALRAGV AKHGVGNWRT ILKDPKFSST LRYRSNVDLK DKWRNINVIV  60
TASGSREKGR TNVKKNRATP KNNDHSMAIS TVASDIDDEI VDVQPIASVS SEVWNNSNTK  120
KSHSRLDNII MEAIKNLKEP TGSHRTTIAN YIEEQYWPPN DFDHILSAKL KDLTTTGKLI  180
KVNRKYRIAP SSPYSVGRSP KILQLEDVQR EPQKIGSNDS KTLTKSQVDA ELARMATMTA  240
EEAAAAAARA VAEAEALMAE AEAAAREAEA AEADAQAAQA FAEAALLTLK NRNAAKLMAQ  300
A
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000039G0930
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957610.0FP095761.1 Phyllostachys edulis cDNA clone: bphyem123a22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.11e-149single myb histone 6 isoform X1
SwissprotC0HIA31e-138SMH6_MAIZE; Single myb histone 6
TrEMBLA0A3L6TP231e-148A0A3L6TP23_PANMI; Uncharacterized protein
STRINGPavir.Ia01166.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]