PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000040G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 398aa    MW: 43510.5 Da    PI: 6.7566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000040G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232.1e-07165187123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C+ Cgk F+r  nL+ H+r H
  PH01000040G0510 165 HSCKVCGKGFKRDANLRMHMRGH 187
                      79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.11E-5163190No hitNo description
Gene3DG3DSA:3.30.160.602.2E-6165191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.404165192IPR007087Zinc finger, C2H2
SMARTSM003550.0017165187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280167187IPR007087Zinc finger, C2H2
SMARTSM0035541213246IPR015880Zinc finger, C2H2-like
SMARTSM0035551251273IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSSAHHFANN QPSYFQPNHN TEARNLDSTM RAWHEQSHGG QGAAGEDHSS SDPSTVLTYL  60
TFLEQKIGHL RGIICSTPHP QQQIVSAELS CIIVQLISIS KNLVARGTAE EADAKSPLNA  120
HEGSDSDQDH HHAEEGADAG EHLPPPGSYE VIQIEKEEIL APHVHSCKVC GKGFKRDANL  180
RMHMRGHGDE YKTAGALAKP CSRDTSPPGR CFYSCPYVGC KRNKEHKNFQ PLKTPICVKN  240
HYRRSHCDKS HTCRRCNVKK FSVLADLRTH EKHCGRDRWV CSCGTSFSRK DKLFGHVAVF  300
DGHTPALPLE EEEEAAAGCG GTASGMSGSG QLPLGSGEAV NRMVDMDQCF SGSMSDDFRC  360
SDIKGSMDDG RGYLFPMGLD SCDFDGFDLF GPPAIHF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000040G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666231e-131AK366623.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2045A04.
GenBankAK3667081e-131AK366708.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2046B02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652000.11e-170PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ943I61e-109STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLJ3LUL51e-168J3LUL5_ORYBR; Uncharacterized protein
STRINGOB03G47410.11e-169(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-105C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]