PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000040G1560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GATA
Protein Properties Length: 266aa    MW: 28691.8 Da    PI: 10.2713
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000040G1560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.23.1e-20159193135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+ C+ttkTplWR gp+g+k+LCnaCG++yrkk++
  PH01000040G1560 159 CTDCHTTKTPLWRGGPSGPKSLCNACGIRYRKKRR 193
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-14152192No hitNo description
SMARTSM004015.8E-18153213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.31153189IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-16157193IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.71E-15158193No hitNo description
PROSITE patternPS003440159184IPR000679Zinc finger, GATA-type
PfamPF003205.9E-18159193IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MVFCFPPHTP PSPLLHLEIS PTRPLFLRPL RSSHPPFLPP SLPPPSASLP STLPPSPAPN  60
PYYSSSLAAA GRPSGVAARY RKQRSATDQE TPRPEPPPLD PRAGAVERRS CGEGGAGEGS  120
AGVVLDPPIL ATEMGSSVEK GSGSPDPDER TASGEPKACT DCHTTKTPLW RGGPSGPKSL  180
CNACGIRYRK KRREALGLDA GEGAEQQQQK KTKREREEVT VELRVVGFGK EVVLKQRRRM  240
RRRRRLGEEE KAAILLMALS SGVIYA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235241QRRRMRR
2237242RRMRRR
3237244RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000040G1560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988580.0FP098858.1 Phyllostachys edulis cDNA clone: bphylf052j14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KL251e-79A0A0E0KL25_ORYPU; Uncharacterized protein
STRINGOPUNC03G36910.12e-80(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-23GATA transcription factor 15