PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000042G1220
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HD-ZIP
Protein Properties Length: 256aa    MW: 28373.5 Da    PI: 4.8761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000042G1220genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.2e-1952106356
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++ft+eq++ Le++F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  PH01000042G1220  52 RKQRFTDEQIRSLESMFHAhRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 106
                      4678**************9789********************************9 PP
2HD-ZIP_I/II122.12.7e-3951144193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+k+r+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ e+L++e+ +L+++l+e
  PH01000042G1220  51 ERKQRFTDEQIRSLESMFHAHRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYTALRAKYDALQARVESLRQEKLALTAQLHE 144
                      69*******************99*******************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1839109IPR009057Homeodomain-like
PROSITE profilePS5007117.28147108IPR001356Homeobox domain
SMARTSM003892.9E-1849112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.2E-1950113IPR009057Homeodomain-like
CDDcd000861.90E-1652109No hitNo description
PfamPF000461.1E-1652106IPR001356Homeobox domain
PRINTSPR000316.3E-77988IPR000047Helix-turn-helix motif
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
PRINTSPR000316.3E-788104IPR000047Helix-turn-helix motif
PfamPF021834.2E-14108149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDRGGRHQHQ FFMPPPVPVQ QQQLCMPMMD EQFLGGGGGG GAAPGRGAAG ERKQRFTDEQ  60
IRSLESMFHA HRAKLEPREK AELARELGLQ PRQVAIWFQN KRARWRSKQI EHDYTALRAK  120
YDALQARVES LRQEKLALTA QLHELSERLR GREQRGGNGV STTTATASSS SCNGSDEGFD  180
DEEFDDDKRN AIGCVHIEPP ESCVLGGTAC ATPADVSVES ECDDQLDYDG GFLESFCATP  240
ELWEPWPLVE WNAVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000042G1220
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2244400.0AY224440.1 Oryza sativa (japonica cultivar-group) isolate 22834 homeodomain leucine zipper protein-like protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-119homeobox-leucine zipper protein HOX22
SwissprotQ01IK01e-102HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-102HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX291e-118A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.19e-35homeobox 7