PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000042G1280

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

Trihelix

Protein Properties

Length: 124aa MW: 13026.3 Da PI: 4.2814

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000042G1280	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.6	6.7e-13	89	124	1	36
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevsk 36 rW+++e+laLi++r+em++++r++ lk+plWeevs+ PH01000042G1280 89 RWPREETLALIRIRSEMDTTFRDATLKGPLWEEVSR 124 8*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	4.10E-15	88	124	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MQQHQGGGSQ FGAPPPDMGP FSPQPAPGPV PLSSWPPPTS QPQAQQQQQT RPSYEELAAV 60 SGAGAGSFPD DDMVGDAVAG GGSGAAGNRW PREETLALIR IRSEMDTTFR DATLKGPLWE 120 EVSR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000042G1280

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP101710	0.0	FP101710.1 Phyllostachys edulis cDNA clone: bphylf025p10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825675.1	5e-37	trihelix transcription factor GTL1-like isoform X2
TrEMBL	A0A3L6PWB5	1e-38	A0A3L6PWB5_PANMI; Uncharacterized protein
STRING	Traes_2BL_0B80B3876.2	2e-36	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15223	12	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	6e-18	GT-2-like 1