PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000043G1720
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 214aa    MW: 24032 Da    PI: 9.8123
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000043G1720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.83.2e-071371692254
                      SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       +yp+++++ +L +++gL+ +q+ +WF N+R +
  PH01000043G1720 137 WPYPTEDDKVRLVQETGLQLKQINNWFINQRKR 169
                      69*****************************87 PP
2ELK262.1e-0990111122
              ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                      ELK +L+++Y+++L+++++E++
  PH01000043G1720  90 ELKSELKQGYKEKLVDIREEIL 111
                      9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.003290111IPR005539ELK domain
PROSITE profilePS512139.8390110IPR005539ELK domain
PfamPF037899.9E-690111IPR005539ELK domain
PROSITE profilePS5007111.224110173IPR001356Homeobox domain
SuperFamilySSF466891.63E-15112175IPR009057Homeodomain-like
SMARTSM003893.3E-9112177IPR001356Homeobox domain
CDDcd000865.55E-10113174No hitNo description
Gene3DG3DSA:1.10.10.603.8E-24117175IPR009057Homeodomain-like
PfamPF059208.6E-18130169IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKGTEKSGSA RKEVGVIRLK ERCDDVVGRV GGAGASPGEG TGATMSDDED NQVDSETNMF  60
DGNDGSDGMG FGPLILTEGE RSLIERVRHE LKSELKQGYK EKLVDIREEI LRKRRAGKLP  120
GDTASTLKTW WQAHSKWPYP TEDDKVRLVQ ETGLQLKQIN NWFINQRKRN WHTNAASSGE  180
KTKKKRVQYI PGLALEQQDL KTNPLFTRKF EKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166185RKRNWHTNAASSGEKTKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000043G1720
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076271e-171AB007627.2 Oryza sativa Japonica Group HOS58 mRNA, complete cds.
GenBankAB0618171e-171AB061817.1 Oryza sativa Japonica Group HOS58 mRNA for KNOX family class 2 homeodomain protein, partial cds.
GenBankAK2433521e-171AK243352.1 Oryza sativa Japonica Group cDNA, clone: J100060L07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646985.11e-104PREDICTED: homeobox protein knotted-1-like 2 isoform X2
RefseqXP_006646986.11e-104PREDICTED: homeobox protein knotted-1-like 2 isoform X1
RefseqXP_015626238.11e-104homeobox protein knotted-1-like 2 isoform X2
SwissprotQ0E3C31e-104KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0D3F1M21e-103A0A0D3F1M2_9ORYZ; Uncharacterized protein
TrEMBLA3A3U61e-103A3A3U6_ORYSJ; Uncharacterized protein
STRINGOBART02G06260.11e-104(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.22e-77KNOTTED1-like homeobox gene 3