PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000044G0540
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 440aa    MW: 47452.4 Da    PI: 6.1861
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000044G0540genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.62.7e-2430126699
                      ..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   6 tpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      ++sd+++ g +++p+ +a ++          ++ +  +l ++d++g+ We+++iyr++++r++lt+GW++Fv+a+ L +gD+vvF+  +r ++e
  PH01000044G0540  30 SQSDANNGGGFSIPRFCA-DYifpkldfeADPPVQ--KLLMRDLQGKAWEFRHIYRGTPRRHLLTTGWSKFVNAKLLVAGDTVVFM--RRPDGE 118
                      5899999*******7666.677*****95444444..89***********************************************..679*** PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      l+v+v+r+
  PH01000044G0540 119 LLVGVRRA 126
                      ******97 PP
2Auxin_resp54.45.4e-19154228179
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkma.fetedsserrl.sGtvvgvsdldpvrWpnSkW 79 
                      aa+ a+++s+F+v+Y+Pr+++ eFvv++++ve a++   + +G +++m+ +eteds++  +  Gtv +v  +         W
  PH01000044G0540 154 AARLAAEGSTFTVTYYPRQGAGEFVVPRKEVEGAINkGDWEPGVQVRMQvMETEDSRRSDWaNGTVKAVDPSTI-------W 228
                      678999*****************************9779*********868**********9****99876333.......3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-1325127IPR003340B3 DNA binding domain
PROSITE profilePS5086312.53425127IPR003340B3 DNA binding domain
CDDcd100176.49E-1930125No hitNo description
PfamPF023624.1E-2130126IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-3031128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-2431128IPR015300DNA-binding pseudobarrel domain
PfamPF065072.3E-15154230IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAQPPAAPLL DPLVWLACAV PFSRLPAVGS QSDANNGGGF SIPRFCADYI FPKLDFEADP  60
PVQKLLMRDL QGKAWEFRHI YRGTPRRHLL TTGWSKFVNA KLLVAGDTVV FMRRPDGELL  120
VGVRRAPRYP VSLHAAGPLR NARARVPPQE VLDAARLAAE GSTFTVTYYP RQGAGEFVVP  180
RKEVEGAINK GDWEPGVQVR MQVMETEDSR RSDWANGTVK AVDPSTIWRM LEIDWNDSTS  240
SSSAKSRHVN AWQVQLAGYP PLLKRLRISE AIPPVCSGTG AIADPLMGPE SQNMAILLGS  300
PIPAGMQGAR HNAPTDVPSS SAKMFTTQLL FPGDLQIPPP SLSGGSSEIV NPENESPPNN  360
SVNKHPSDLP DEVRSMQLFG TTITSPVQSA TNGASEEVNQ VPSGVVDGTA NEDASASSPV  420
DWSLSKDDGH NQNDSRQRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A4e-4132255165388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000044G0540
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003579544.10.0auxin response factor 13
RefseqXP_010240662.10.0auxin response factor 13
SwissprotQ7XSS91e-137ARFM_ORYSJ; Auxin response factor 13
TrEMBLI1J3S50.0I1J3S5_BRADI; Auxin response factor
STRINGBRADI5G27400.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113553137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.18e-68auxin response factor 17
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]