PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000044G0620
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 442aa    MW: 47469 Da    PI: 9.2491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000044G0620genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-06211233223
                      EETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      +CpdCg+ F r ++L+ H++  H
  PH01000044G0620 211 TCPDCGEIFVRAESLELHQSIrH 233
                      8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933210234IPR007087Zinc finger, C2H2
PROSITE patternPS000280210233IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-20235440No hitNo description
Gene3DG3DSA:3.90.228.101.5E-12237440IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVEAGRTAGA RETKKTTSTS MKKKLVTTKP DKEKEKSSRE KESSKKQSSH CTEPESPSYR  60
LALKSLFSCR NSHGHSHARQ HAPDSKKCKK IGCSASVCKL KDNPRVMQRP DQDATAATAP  120
PGEACKRRAS VSACNSSSER CLKKPLSQVN AVTAAASKHG GSLSSTSSSS TGGSFRGMQL  180
RRLSGCYECH MVVDPISGVF RDNSMRATIC TCPDCGEIFV RAESLELHQS IRHAVCELGP  240
EDTSRNIIEI IFQSSWLKKQ SPVCNIDRIL KVHNTPKTLA RFEEYRDAVK AKASNHQLAK  300
KHPRCTADGN ELLRFHCATL ACSLGLHGAT HLCDLASAGC NACGIIRDGF KTAASGGDAA  360
AGIRTMATSG RAHDAVEGAG ERRAMLVCRV IAGRVKRPQE AAAAEEYDSV AGSAGVYSNL  420
DELDVFNPRA ILPCFVVVYK A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000044G0620
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824982.11e-173uncharacterized protein LOC112900370
TrEMBLA0A0A9FEQ30.0A0A0A9FEQ3_ARUDO; Uncharacterized protein
STRINGSi025079m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-99C2H2-like zinc finger protein