PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000045G0080
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 605aa    MW: 64857.9 Da    PI: 6.5137
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000045G0080genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.41.9e-1192115811374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilk 92 
                      lve+L++cA+ +++ ++ +a+ +Larl e+asp+g +pm+R+aayf+eALa r++r++++++++ pp+e +++   ++ ++al++++ ++Pi++
  PH01000045G0080 211 LVEALTACADSLAACNHDAANYYLARLGEMASPAGpTPMHRVAAYFAEALALRVVRMWPHVFDISPPRELTDDAiNDDDAMALRVLNSITPIPR 304
                      6899******************************************************************988889999*************** PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      f h+t N+ +l+a+eg+ervH+iDfdi+qGlQWp+Llq+La+Rpe+p+++RiTgvg+    s++el+etg rLa++A+ lg+ fef++ v++rl
  PH01000045G0080 305 FLHFTLNERLLRAFEGHERVHVIDFDIKQGLQWPSLLQSLAARPEPPAHVRITGVGD----SRQELQETGARLARVAAVLGLAFEFHA-VVDRL 393
                      *********************************************************....9**************************.7**** PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres 279
                      ed++l++L+vk+gE++aVn+vl +hrll++++  +    ++L l +s+ + ++ + e+e  +ns+++ +rf++al+yy+  fd++ +a+l+ +s
  PH01000045G0080 394 EDVRLWMLHVKRGECVAVNCVLTMHRLLRDETGGA--LADFLGLTRSTGAAILLLGEHEGGLNSGRWEARFARALRYYAGAFDAVnAAGLADAS 485
                      ****************************6655444..589*********************************************999****** PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsvS 371
                       +r+k E++ ++r i+n+va ega+r+erhe+++ W++r+e+ GFk++ +++++a+q +++ r+++   y+v+ +   + l+l W d++L++v+
  PH01000045G0080 486 PARAKAEEM-FARGIRNAVAFEGADRFERHESFAGWQRRMEDGGFKNAGIGDREAMQGRMIARMFAPGKYSVQAQgdGEGLTLRWLDQALYTVT 578
                      *********.********************************************************4449999554367788************ PP

             GRAS 372 aWr 374
                      aW+
  PH01000045G0080 579 AWT 581
                      **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.992185559IPR005202Transcription factor GRAS
PfamPF035146.7E-117211581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MLAGCSFSSR HQMSTAQRFD ILPCGFSKRS NRGDGAAPRG AGDARSTTTC SFRTHPAPPV  60
TQAVSWGAKP EPGGVWEKSR AVKRAHEEDA VEEYGPIVRA KRTRMGGDGD EVWFHQSIAG  120
TMQATAAGEG DEADEEKVFL VPSAAAFPHG MAAGPSLAAA KKEEYSKSPS HSSSSSGTDG  180
GSSAMPPPPP EVHARNGVPA PGVAEREALE LVEALTACAD SLAACNHDAA NYYLARLGEM  240
ASPAGPTPMH RVAAYFAEAL ALRVVRMWPH VFDISPPREL TDDAINDDDA MALRVLNSIT  300
PIPRFLHFTL NERLLRAFEG HERVHVIDFD IKQGLQWPSL LQSLAARPEP PAHVRITGVG  360
DSRQELQETG ARLARVAAVL GLAFEFHAVV DRLEDVRLWM LHVKRGECVA VNCVLTMHRL  420
LRDETGGALA DFLGLTRSTG AAILLLGEHE GGLNSGRWEA RFARALRYYA GAFDAVNAAG  480
LADASPARAK AEEMFARGIR NAVAFEGADR FERHESFAGW QRRMEDGGFK NAGIGDREAM  540
QGRMIARMFA PGKYSVQAQG DGEGLTLRWL DQALYTVTAW TPASEGAGGS TVSASTTASH  600
SQQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5821858425381Protein SCARECROW
5b3h_D2e-5821858425381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000045G0080
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812393.10.0protein DWARF AND LOW-TILLERING
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A1E5WNH30.0A0A1E5WNH3_9POAL; Scarecrow-like protein 28
STRINGOPUNC06G01470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-131GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]