PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000046G0140

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HB-other

Protein Properties

Length: 1831aa MW: 203663 Da PI: 5.2065

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000046G0140	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	44	98	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ + +++yp+++ r+eL+ klgLt+rq ++WF+ rR k++k PH01000046G0140 44 KRVMKTPYQLEVLEKTYTEDPYPDETLRAELSVKLGLTDRQLQMWFCHRRLKDRK 98 89999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.1E-18	25	98	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.71E-17	26	98	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.228	39	99	IPR001356	Homeobox domain
SMART	SM00389	2.5E-15	41	103	IPR001356	Homeobox domain
CDD	cd00086	1.31E-14	44	99	No hit	No description
Pfam	PF00046	2.5E-16	44	98	IPR001356	Homeobox domain
PROSITE profile	PS50827	15.995	605	664	IPR018501	DDT domain
SMART	SM00571	1.4E-18	605	664	IPR018501	DDT domain
Pfam	PF02791	2.5E-16	607	661	IPR018501	DDT domain
Pfam	PF05066	1.8E-13	787	854	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	8.4E-9	1009	1051	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-11	1188	1267	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1831 aa Download sequence Send to blast
MDSSGDGGDE GAGVGKQESP APASAPAAGG GAGASGSGGK PAAKRVMKTP YQLEVLEKTY 60 TEDPYPDETL RAELSVKLGL TDRQLQMWFC HRRLKDRKPP AKLQQREEEV AVPVIAPPPV 120 LPPSLPHSEL TVGSTGTYGE QLLPCSRRGP GRSSAVPRIS VPEIGRRYYE PPQVMLPPLA 180 PMQLTRAERQ VIDSVQELIG EPLREDGPVL GFEFDPLPPG AFGAPIVPEK RKQPFRSYET 240 KIFSGHDPKL MKASAFLPSI DPFIPNTVTG KRKSMVGNYS HLGSQAIHEY QFLPDEPSDI 300 YERAGQSRFY GAPTEASNSR ISSLSTGSHF LHGAEHAPSY SFHHQISGSS HLTQHGRPPI 360 FPSGSTDYEM APSNINVSSA PVEGQFGIPQ VAGFENPLAS SEIMDYQDED AYRLDRKRKR 420 NEEAKIAKEV EAHEKRIRKE LEKQDVLNRK REEQMQREME RHDRERRKEE ERLMREKQRE 480 EERFQKEQRR EHNRMEKFLQ KQSIRAEKLR QKEELRKEKE AARQKAANER ATARRIAREY 540 MELMEDERLE LMELVSRSKG LPSMLSLDSD TLQQLDSFRG MLRQFPTEIV RLKVPFSIKP 600 WTSSEDNIGN LLMVWKFFIT FADVLGLPSF TLDEFVQSLH DYDSRLLGEL HVALLKSIIK 660 DIEDVARTPS VASGVNQSSS ANPGGGHPQI VEGAYAWGFN ILTWQRHLNF LTWPEILRQF 720 GLSAGFGPQL KKRKAEDVYY HDDNEGHDGE DVISTLRNGS AAVSAAAKMK ERGYTNRRRS 780 RHRLTPGTVK FAAFHVLSLE GCKGLSILEV AEKIQISGLR DLTTSKTPEA SISAALSRDT 840 KLFERTAPLT YCVKTPYRKD PADSVAVLSA AREKIRVFQN ALSECAEVVK DVDDAERGED 900 SECDDADDDP DGDEVDIEEK DVKATIVKAQ DGGVPTAVGD INDEPNSAVN TLMPPSTHSK 960 SCESGLLRTL DKSCAVSTSS DPPIGALSDY HEVATDDAQD TEIDESNQGQ SWVQGLAEGD 1020 YCDLSVEERL NALVALIGVA TEGNSIHAIL EERLEAANAL KKQMWAEAQL DKRRLREEFA 1080 SKMQYDSCVV SKVDADQENN VAESTLAPLR NLVKDNDGNA STVNNDLLVD QQSQLNAGNI 1140 AHERNGISRE LNANTESLSV QQYASSEKTR SQLKSYIGHK AEQLYVYRSL PLGQDRRRNR 1200 YWQFSTSASP NDPGSGRIFF ESKDGYWRLI DSSEATDHSS AQAFDALVAS LDTRGIRESH 1260 LHSMLQSIES TFKEAIGRKK CASIEHSAGR ILKNGSSEIR SPNHSNEFGS PCSTLSGVAS 1320 DNVMAYSDSF KIELGRNDAE KIAISERASM FLKWMRRECN NHQFTCAMKY GKKRCSELMQ 1380 SCDYCYQIYL TEERHCSSCH KTFKSIHNLS EHTSQCEEKQ RTDPNWKMQI SDNSIPLGLR 1440 LLKLLLATIE HCVLQASIPA EALQPFWTDG YRKSWSVKLL TVLEGAIKRD YLSSNFETTN 1500 ELLNSNTQDF STQNSVARSG SSAVLPWVPD TTAAVALRML DLDSAISYTL HQKAGSNKER 1560 EAGDFTKLPS RYTVVKNKQE MEPMGATGFD KHDGVWLTPG NVRRGRGRGG RGGSRGGRSR 1620 SRGGKVPRGI GSSPKVESYE KVPRKQARRG RNRGRGRGLR TVRPRQPSEL GARSIPTGNL 1680 LGSFSMLSNA KPTTTLHSPQ SSGAEEWGLE RRAYVEDDEN NLVSQSDESE GNGEPMNEDY 1740 DEQLPDCSRD NSGSSPLQTM DDGAEDNDED DEGDGEGEED EDYDAEHPID EDIDDAEMGE 1800 DDELDDDDVR GGVENAVEDD GTSYSSEYSE *

Sequence ? help Back to Top

Protein Sequence Length: 1831 aa Download sequence Send to blast

MDSSGDGGDE GAGVGKQESP APASAPAAGG GAGASGSGGK PAAKRVMKTP YQLEVLEKTY  60
TEDPYPDETL RAELSVKLGL TDRQLQMWFC HRRLKDRKPP AKLQQREEEV AVPVIAPPPV  120
LPPSLPHSEL TVGSTGTYGE QLLPCSRRGP GRSSAVPRIS VPEIGRRYYE PPQVMLPPLA  180
PMQLTRAERQ VIDSVQELIG EPLREDGPVL GFEFDPLPPG AFGAPIVPEK RKQPFRSYET  240
KIFSGHDPKL MKASAFLPSI DPFIPNTVTG KRKSMVGNYS HLGSQAIHEY QFLPDEPSDI  300
YERAGQSRFY GAPTEASNSR ISSLSTGSHF LHGAEHAPSY SFHHQISGSS HLTQHGRPPI  360
FPSGSTDYEM APSNINVSSA PVEGQFGIPQ VAGFENPLAS SEIMDYQDED AYRLDRKRKR  420
NEEAKIAKEV EAHEKRIRKE LEKQDVLNRK REEQMQREME RHDRERRKEE ERLMREKQRE  480
EERFQKEQRR EHNRMEKFLQ KQSIRAEKLR QKEELRKEKE AARQKAANER ATARRIAREY  540
MELMEDERLE LMELVSRSKG LPSMLSLDSD TLQQLDSFRG MLRQFPTEIV RLKVPFSIKP  600
WTSSEDNIGN LLMVWKFFIT FADVLGLPSF TLDEFVQSLH DYDSRLLGEL HVALLKSIIK  660
DIEDVARTPS VASGVNQSSS ANPGGGHPQI VEGAYAWGFN ILTWQRHLNF LTWPEILRQF  720
GLSAGFGPQL KKRKAEDVYY HDDNEGHDGE DVISTLRNGS AAVSAAAKMK ERGYTNRRRS  780
RHRLTPGTVK FAAFHVLSLE GCKGLSILEV AEKIQISGLR DLTTSKTPEA SISAALSRDT  840
KLFERTAPLT YCVKTPYRKD PADSVAVLSA AREKIRVFQN ALSECAEVVK DVDDAERGED  900
SECDDADDDP DGDEVDIEEK DVKATIVKAQ DGGVPTAVGD INDEPNSAVN TLMPPSTHSK  960
SCESGLLRTL DKSCAVSTSS DPPIGALSDY HEVATDDAQD TEIDESNQGQ SWVQGLAEGD  1020
YCDLSVEERL NALVALIGVA TEGNSIHAIL EERLEAANAL KKQMWAEAQL DKRRLREEFA  1080
SKMQYDSCVV SKVDADQENN VAESTLAPLR NLVKDNDGNA STVNNDLLVD QQSQLNAGNI  1140
AHERNGISRE LNANTESLSV QQYASSEKTR SQLKSYIGHK AEQLYVYRSL PLGQDRRRNR  1200
YWQFSTSASP NDPGSGRIFF ESKDGYWRLI DSSEATDHSS AQAFDALVAS LDTRGIRESH  1260
LHSMLQSIES TFKEAIGRKK CASIEHSAGR ILKNGSSEIR SPNHSNEFGS PCSTLSGVAS  1320
DNVMAYSDSF KIELGRNDAE KIAISERASM FLKWMRRECN NHQFTCAMKY GKKRCSELMQ  1380
SCDYCYQIYL TEERHCSSCH KTFKSIHNLS EHTSQCEEKQ RTDPNWKMQI SDNSIPLGLR  1440
LLKLLLATIE HCVLQASIPA EALQPFWTDG YRKSWSVKLL TVLEGAIKRD YLSSNFETTN  1500
ELLNSNTQDF STQNSVARSG SSAVLPWVPD TTAAVALRML DLDSAISYTL HQKAGSNKER  1560
EAGDFTKLPS RYTVVKNKQE MEPMGATGFD KHDGVWLTPG NVRRGRGRGG RGGSRGGRSR  1620
SRGGKVPRGI GSSPKVESYE KVPRKQARRG RNRGRGRGLR TVRPRQPSEL GARSIPTGNL  1680
LGSFSMLSNA KPTTTLHSPQ SSGAEEWGLE RRAYVEDDEN NLVSQSDESE GNGEPMNEDY  1740
DEQLPDCSRD NSGSSPLQTM DDGAEDNDED DEGDGEGEED EDYDAEHPID EDIDDAEMGE  1800
DDELDDDDVR GGVENAVEDD GTSYSSEYSE *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000046G0140

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020162194.1	0.0	homeobox-DDT domain protein RLT2-like
TrEMBL	A0A3B5Y7E3	0.0	A0A3B5Y7E3_WHEAT; Uncharacterized protein
TrEMBL	A0A446JC34	0.0	A0A446JC34_TRITD; Uncharacterized protein
STRING	OGLUM05G27370.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator