PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000046G0930
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family WRKY
Protein Properties Length: 1076aa    MW: 114434 Da    PI: 6.7116
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000046G0930genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.14.2e-24885935251
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveit 51 
                      +Dg++WrKYGqK+ kgs++pr+YYrCt+a gCpv+k+v+r+aed +v+++t
  PH01000046G0930 885 SDGCQWRKYGQKMAKGSPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVLITT 935
                      7***************************99***************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF506301.9E-1149316IPR021109Aspartic peptidase domain
CDDcd06098071494No hitNo description
Gene3DG3DSA:2.40.70.103.7E-3173160IPR021109Aspartic peptidase domain
PfamPF000262.2E-12980495IPR033121Peptidase family A1 domain
PROSITE profilePS5176769.70181504IPR033121Peptidase family A1 domain
PRINTSPR007921.0E-2787107IPR001461Aspartic peptidase A1 family
PROSITE patternPS00141096107IPR001969Aspartic peptidase, active site
Gene3DG3DSA:2.40.70.105.6E-90161312IPR021109Aspartic peptidase domain
PRINTSPR007921.0E-27233246IPR001461Aspartic peptidase A1 family
PROSITE patternPS001410283294IPR001969Aspartic peptidase, active site
PRINTSPR007921.0E-27283294IPR001461Aspartic peptidase A1 family
PROSITE profilePS5001513.277311351IPR008139Saposin B type domain
SuperFamilySSF478622.58E-27312414IPR011001Saposin-like
Gene3DG3DSA:1.10.225.101.8E-9313348IPR011001Saposin-like
PfamPF034891.2E-12314347IPR008138Saposin B type, region 2
PROSITE profilePS5001512.341375416IPR008139Saposin B type domain
Gene3DG3DSA:1.10.225.106.9E-9375419IPR011001Saposin-like
PfamPF051842.7E-13378414IPR007856Saposin-like type B, region 1
SuperFamilySSF506301.9E-114421495IPR021109Aspartic peptidase domain
Gene3DG3DSA:2.40.70.105.6E-90422495IPR021109Aspartic peptidase domain
PRINTSPR007921.0E-27478493IPR001461Aspartic peptidase A1 family
Gene3DG3DSA:2.20.25.802.1E-26869935IPR003657WRKY domain
SuperFamilySSF1182901.23E-21877935IPR003657WRKY domain
PROSITE profilePS5081122.928879935IPR003657WRKY domain
SMARTSM007741.6E-24884938IPR003657WRKY domain
PfamPF031061.2E-20886935IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0006629Biological Processlipid metabolic process
GO:0009651Biological Processresponse to salt stress
GO:0009735Biological Processresponse to cytokinin
GO:0005773Cellular Componentvacuole
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1076 aa     Download sequence    Send to blast
MGTRSVALML LAAVLLQTLL PASTAEGLVR IALKKRPIDE NSRVATRLSG EEGQRLRGAN  60
SLGAGGEGDI IALKNYMNAQ YFGEIGIGTP AQKFTVIFDT GSSNLWVPSS KCYFSIACYF  120
HSRYKSGQSS TYKKNGKPAD IHYGTGAISG VFSEDSVTVG DLVVKDQEFI EATREPSITF  180
MVAKFDGILG LGFQEISVGN AVPVWYKMVE QGLISDPVFS FWFNRHADEG QGGEIVFGGM  240
DPSHYKGNHT YVPVTQKGYW QFEMGDVLIG GKSTGFCVGG CSAIADSGTS LLAGPTAIIT  300
EINEKIGATG VVSQECKTVV SQYGQQILDL LLAETQPAKI CSQVGLCTFD GTHGVSAGIQ  360
SVVDDEAGKL NGLHSDAMCN ACEMAVVWMQ SQLAQNQTQE LVLKYINQLC DRLPSPMGES  420
SVDCGSLASM PDIAFSIGGK KFVLKPEQYI LKVGEGPAAQ CISGFTALDI PPPRGPLWIL  480
GDVFMGAYHT VFDYEIGKSP TSRSGAPPRV RFRDLLICLP GLLLFNPPLI APLCCSASSF  540
LVICMESYVG AGLKRKSVVG GGAVGADSLE LPSPSEFPAV GLAGCGAGKD GGQERRVVVG  600
EMDFFKTEMR KEKQERKEAA ADHAGGAPDD LSIKKGELTI NVGESVGGDF QRIPSCSGLE  660
FQFLDIFLLL GYMQMGLHIG RRNSVTKSEL GRLNEENKRL KNTLSSVTTK YNSLHMHLVT  720
LMQQRNHRGL GTPTIHELID PEKDQDQGSL LPRRFLSLAS ASLSDEPSHS VGVDVRGSDC  780
APSPSNPDAA TPTMDYCPGN SNVKGAMINS KDSMPLPAFD HHHPRIQERD RSPETQQHLP  840
QSWLPNKVPK FLPTTTKGPE PVPEAAAMRK ARVSVRARSE APMMSDGCQW RKYGQKMAKG  900
SPCPRAYYRC TMAAGCPVRK QVQRCAEDRT VLITTVATIS ASAPFPTVTL DLTQTAPGTS  960
ASTQSPRPEP AQLQVVLAEA ARPASLPQLF GQKLYDQSKL SAVQAVAGTK AADGGALADT  1020
VSAATAAITS DPNFTAVLAA AITSYIGSSS SGGGGATGGG GDSCSRDEKI GEQNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1qdm_A0.0294941467PROPHYTEPSIN
1qdm_B0.0294941467PROPHYTEPSIN
1qdm_C0.0294941467PROPHYTEPSIN
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000046G0930
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677420.0AK067742.1 Oryza sativa Japonica Group cDNA clone:J013116C15, full insert sequence.
GenBankAK1034210.0AK103421.1 Oryza sativa Japonica Group cDNA clone:J033128K05, full insert sequence.
GenBankAK1048380.0AK104838.1 Oryza sativa Japonica Group cDNA clone:001-042-E12, full insert sequence.
GenBankAK2890960.0AK289096.1 Oryza sativa Japonica Group cDNA, clone: J090096D02, full insert sequence.
GenBankEU2679730.0EU267973.1 Oryza sativa Japonica Group clone KCS333A05 aspartic proteinase oryzasin 1 mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.17e-48WRKY family protein