PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000046G0990
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 136aa    MW: 15178.2 Da    PI: 9.6433
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000046G0990genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-081560345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +W++ E + + +a + +G g   +W+++++ mg  +++++++ ++ 
  PH01000046G0990 15 AWSPKENKMFEEALAYYGEGtpnRWDKVSSAMGGSKSAEEVRCHYE 60
                     7********************************99*******9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-61265IPR001005SANT/Myb domain
PROSITE profilePS500906.8881463IPR017877Myb-like domain
CDDcd001672.41E-51563No hitNo description
SuperFamilySSF466897.48E-121570IPR009057Homeodomain-like
PfamPF002493.3E-71560IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MSSGSRSSSP NSISAWSPKE NKMFEEALAY YGEGTPNRWD KVSSAMGGSK SAEEVRCHYE  60
VLVDDVKMIE TARVPYPKYK TQGFWTRALL RRARAVLSLF GHTTAHGMIK DEALEAPVDR  120
RQSCINYIPK NGLKF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-21783277RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000046G0990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126132e-76CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303052.14e-41protein RADIALIS-like 3
SwissprotQ1A1733e-23RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1E5W9U02e-40A0A1E5W9U0_9POAL; Uncharacterized protein
STRINGSb09g028790.14e-41(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.12e-21RAD-like 5