PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000048G0270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CO-like
Protein Properties Length: 326aa    MW: 34825.9 Da    PI: 6.1048
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000048G0270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.13.2e-071962441
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                     ++C+ +   +  ++C  +   lC+ C    H+       H++vp
  PH01000048G0270 19 QRCDSCCAAPSAFYCLADAAALCAACDADVHSAnplarrHRRVP 62
                     79*****************************6689999999998 PP
2CCT68.81.4e-23257300144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      Rea++ RY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  PH01000048G0270 257 REARVHRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRA 300
                      9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.2E-111663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.2811663IPR000315B-box-type zinc finger
PfamPF006431.4E-51962IPR000315B-box-type zinc finger
PROSITE profilePS5101716.797257299IPR010402CCT domain
PfamPF062031.9E-17257299IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLKLEPKLRG PRGGAAGLQR CDSCCAAPSA FYCLADAAAL CAACDADVHS ANPLARRHRR  60
VPMGAVAPPS PAGGASVVWP GVNSSWPIRE GRRCDYDDTG DGKDDDEEEA TSWLLLDPPK  120
GAEGPPYGDA LVADFLDLGG EKDFSPSSKE CSSHGKSSEG SHEFVVPGEP VAQLPERQGF  180
AAEMAYDTSN SNHGYGFGAT VGHSVSMSSL DNSTVPDCAA PDITSSYLMP SKSTIDLFAV  240
AGPAAAHMSP QLMAMDREAR VHRYREKRKT RRFEKTIRYA SRKAYAETRP RIKGRFAKRA  300
DADLEVDQYF SAAALADSSC GVVPTF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as repressor of flowering under SD conditions, independently of HD1, EHD1, MADS50 and MADS51. Controls flowering time under SD conditions by negatively regulating the expression of HD3A and FTL. {ECO:0000269|PubMed:18449564}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000048G0270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases after the beginning of the dark period, peaks at dawn, stays high four hours and gradually decreases until sunset. {ECO:0000269|PubMed:18449564}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0988190.0FP098819.1 Phyllostachys edulis cDNA clone: bphyem115g16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612389.11e-138zinc finger protein CO3-like
SwissprotO821171e-139CO3_ORYSJ; Zinc finger protein CO3
TrEMBLA0A3Q8BXM91e-175A0A3Q8BXM9_9POAL; COLB
STRINGORGLA09G0014500.11e-145(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1435899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.15e-27CONSTANS-like 2