PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000048G0730
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 115aa    MW: 12493.2 Da    PI: 7.1889
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000048G0730genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.61.1e-111445132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     rg W++eEde+lv+++  +G g+W++++r  g
  PH01000048G0730 14 RGLWSPEEDEKLVKYISTHGHGCWSSVPRQAG 45
                     789**************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-14643IPR009057Homeodomain-like
SuperFamilySSF466895.01E-9945IPR009057Homeodomain-like
PROSITE profilePS512949.998963IPR017930Myb domain
SMARTSM007178.8E-41371IPR001005SANT/Myb domain
PfamPF002492.0E-91446IPR001005SANT/Myb domain
CDDcd001671.51E-71761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGHHSCCNKQ KVRRGLWSPE EDEKLVKYIS THGHGCWSSV PRQAGTCTYT CGVRSVTSVV  60
QCTSVYALLH MRVLDVHACR AAEVWQELQA EVDQLPEAGP EEGKLLAAGG GPHH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000048G0730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1016440.0FP101644.1 Phyllostachys edulis cDNA clone: bphylf030k19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694862.16e-26PREDICTED: myb-related protein 340-like
TrEMBLA0A453F9342e-48A0A453F934_AEGTS; Uncharacterized protein
STRINGOB01G37410.17e-26(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60323757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.13e-27myb domain protein 26