PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000051G0410
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 294aa    MW: 32080.2 Da    PI: 9.3533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000051G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.2e-14219244126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ +  tG C+yGd+C+FaHg
  PH01000051G0410 219 FKTELCNKWEDTGACPYGDQCQFAHG 244
                      79***********************9 PP
2zf-CCCH17.66.8e-06257282126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt  Cr  +++  C+yG rC+F H+
  PH01000051G0410 257 YKTQVCRMVLAGDVCPYGHRCHFRHS 282
                      899********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.5E-18215251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-10216250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591218246IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-9218245IPR000571Zinc finger, CCCH-type
PfamPF006427.9E-12219244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-11252282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-8253283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.216256284IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4256283IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MPGRQAKHGF GQSCQPPNGD WSKQNEPDRA PYQEVADRYE LYLSHLAEAA DEAAALRREN  60
AELRVANSGL VRRLALLSGK QTAAVAIADE IRRLPAAVAA TKERTPEKLS VLSKSISVRS  120
NGYLKMSQPA QAAATPAAHN RKPRALNPTN PSSVSPNSRL VNSTAPLELT SDTVALSTYV  180
ARIKQQRAYV GADGGRKGEE QKEQGAGGAE LEVYDQGMFK TELCNKWEDT GACPYGDQCQ  240
FAHGVAELRP VIRHPRYKTQ VCRMVLAGDV CPYGHRCHFR HSLTPAERLL LRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22219282467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000051G0410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957551e-133FP095755.1 Phyllostachys edulis cDNA clone: bphylf030c20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154780.11e-106zinc finger CCCH domain-containing protein 9-like isoform X1
SwissprotA2ZVY51e-104C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A446NIZ81e-118A0A446NIZ8_TRITD; Uncharacterized protein
STRINGOPUNC01G24490.11e-114(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-47C3H family protein