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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01000053G2220 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
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| Family |
GRAS |
| Protein Properties |
Length: 322aa MW: 34978.8 Da PI: 6.9142 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000053G2220 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 355.5 | 7.8e-109 | 1 | 314 | 49 | 374 |
GRAS 49 Laarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpps 141
++arl++s+ +ly+ l ++s+++++ + +++aa+++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp+
PH01000053G2220 1 MSARLVSSCLGLYAPLpHASPAATRLHGRVAAAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPR 94
5799************4455555555999999************************************************************** PP
GRAS 142 lRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
+R+Tg+g+ s e+le+tg+rL++fA++lg+pfef + va++ +l++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l
PH01000053G2220 95 VRLTGLGA----SMEALEATGRRLSDFADTLGLPFEFCP-VADKAGNLDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLA 177
********....***************************.7*************************9..999999999999....********* PP
GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
Pkvv++veq+++h s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + ++ Wr++l ++GF+ ++l
PH01000053G2220 178 PKVVTMVEQDLSH-SGSFLARFVEAIHYYSALFDSLDASYSEDSPERHVVEQQLLSREIRNVLAVGGPARTGDVK-FGGWRDKLAQSGFRVASL 269
*************.899****************************************************999987.****************** PP
GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+aa+qa+lll +++sdgy++ ee+g+l lgWkd L+++SaWr
PH01000053G2220 270 AGSAAAQASLLLGMFPSDGYTLVEENGALKLGWKDLCLLTASAWR 314
********************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 322 aa
Download sequence Send
to blast |
MSARLVSSCL GLYAPLPHAS PAATRLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQEAFE 60
REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GRRLSDFADT 120
LGLPFEFCPV ADKAGNLDPE KLGVTRREAV AVHWLHHSLY DVTGSDSNTL WLIQRLAPKV 180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYSEDS PERHVVEQQL LSREIRNVLA 240
VGGPARTGDV KFGGWRDKLA QSGFRVASLA GSAAAQASLL LGMFPSDGYT LVEENGALKL 300
GWKDLCLLTA SAWRPIQTSG R*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094510 | 0.0 | FP094510.1 Phyllostachys edulis cDNA clone: bphylf057n24, full insert sequence. |
