PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000054G0400

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

GRAS

Protein Properties

Length: 785aa MW: 87187.4 Da PI: 6.3496

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000054G0400	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	392	6.6e-120	408	777	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++ L++cA+ v+++d + a++lL++++++asp+gd qRla++f+++L+arla+++s++yk++++ + + +++l+a++l+ ++P+ k+sh PH01000054G0400 408 ETFLIHCAQSVATDDRRSATELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSFTTVRFA---CTDVLKAYQLYLAACPFKKISH 498 5679**************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187 aNq+Il+ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g +e++eetg+ L+++A++++vpfef++ +a+r+e PH01000054G0400 499 YFANQTILNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPQPGfrPAERIEETGRYLSDYAQTFNVPFEFQA-IASRFE 591 ***********************************************************************************.7* PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 ++++e+L+++++E l+Vn++++ ++l+desv es+r+ L+++++++P+v+++ + ++n++ F++rf ea+ +ysa+fd+le+++pr++e+ PH01000054G0400 592 AVRIEDLHIEEDEILIVNCMFKFKTLMDESVVAESPRNMALNTIRKMNPHVFIHGITNGSYNAPFFMTRFREAMFHYSAIFDMLETNIPRDNEQ 685 ****************************************************************************************** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r +E +l++re+ +v++ceg er er et+++W+ r ++aGFk++pl++ ++k a+ ++ ++++ + ++e++ +l++gWk+r L+++S W+ PH01000054G0400 686 RLLIESALFSREAISVISCEGLERMERPETYKQWQVRNQRAGFKQLPLNQGIMKRAREKVKCYHKN-FIIDEDNRWLLQGWKGRILFALSTWK 777 *********************************************************99966.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.281	381	758	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.3E-117	408	777	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MALGGARWHV GRGGSMLRCD SVVHHGTEAA PTQHGGGAAR DALDGCTTTG ARNYGAAQRV 60 HGREGGFEPA AQPDDSEAFS DIVLGYINRM LMAEDIDEKF EHYPGHAALL AAEKPFLEIL 120 ADQPPYSADS AVESPDGSSV TNSCNSLSSC NCAAVSDGPG AVQTPSVLEF PSAAFLQSPP 180 LYRDLSPESG VVEAGGAWPY DPTEFYQLQT NPVPEALLSQ SSSFASSNGS SVTLSERFES 240 LLSSAGVVRD VGLNDFVVQS QQAMQFCRGL EEASKFLPDE SKLVIDVDKL PTVASFQAEV 300 KEEMKFVEVK TEKADVEAAI HRGKKHFYGD DLDAEEGRCS KHSASTIDTD HLVREMMDKV 360 LLCNGETCSK GVKELREALQ HDVAKHSNGV HGKGRGKKQP KKEVVDLETF LIHCAQSVAT 420 DDRRSATELL KQIRQHASPN GDGDQRLAHC FANGLEARLA GNGSQIYKSF TTVRFACTDV 480 LKAYQLYLAA CPFKKISHYF ANQTILNAVE KAKKVHIVDY GIYYGFQWPC LIQRLSNRPG 540 GPPKLRITGI DTPQPGFRPA ERIEETGRYL SDYAQTFNVP FEFQAIASRF EAVRIEDLHI 600 EEDEILIVNC MFKFKTLMDE SVVAESPRNM ALNTIRKMNP HVFIHGITNG SYNAPFFMTR 660 FREAMFHYSA IFDMLETNIP RDNEQRLLIE SALFSREAIS VISCEGLERM ERPETYKQWQ 720 VRNQRAGFKQ LPLNQGIMKR AREKVKCYHK NFIIDEDNRW LLQGWKGRIL FALSTWKPDH 780 RSSS*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MALGGARWHV GRGGSMLRCD SVVHHGTEAA PTQHGGGAAR DALDGCTTTG ARNYGAAQRV  60
HGREGGFEPA AQPDDSEAFS DIVLGYINRM LMAEDIDEKF EHYPGHAALL AAEKPFLEIL  120
ADQPPYSADS AVESPDGSSV TNSCNSLSSC NCAAVSDGPG AVQTPSVLEF PSAAFLQSPP  180
LYRDLSPESG VVEAGGAWPY DPTEFYQLQT NPVPEALLSQ SSSFASSNGS SVTLSERFES  240
LLSSAGVVRD VGLNDFVVQS QQAMQFCRGL EEASKFLPDE SKLVIDVDKL PTVASFQAEV  300
KEEMKFVEVK TEKADVEAAI HRGKKHFYGD DLDAEEGRCS KHSASTIDTD HLVREMMDKV  360
LLCNGETCSK GVKELREALQ HDVAKHSNGV HGKGRGKKQP KKEVVDLETF LIHCAQSVAT  420
DDRRSATELL KQIRQHASPN GDGDQRLAHC FANGLEARLA GNGSQIYKSF TTVRFACTDV  480
LKAYQLYLAA CPFKKISHYF ANQTILNAVE KAKKVHIVDY GIYYGFQWPC LIQRLSNRPG  540
GPPKLRITGI DTPQPGFRPA ERIEETGRYL SDYAQTFNVP FEFQAIASRF EAVRIEDLHI  600
EEDEILIVNC MFKFKTLMDE SVVAESPRNM ALNTIRKMNP HVFIHGITNG SYNAPFFMTR  660
FREAMFHYSA IFDMLETNIP RDNEQRLLIE SALFSREAIS VISCEGLERM ERPETYKQWQ  720
VRNQRAGFKQ LPLNQGIMKR AREKVKCYHK NFIIDEDNRW LLQGWKGRIL FALSTWKPDH  780
RSSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	9e-53	411	777	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000054G0400

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004970541.1	0.0	scarecrow-like protein 9
TrEMBL	A0A368RD42	0.0	A0A368RD42_SETIT; Uncharacterized protein
STRING	Si000234m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12518	31	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-169	GRAS family protein