PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000054G1270
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 184aa    MW: 19428.6 Da    PI: 5.5099
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000054G1270genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00066107129123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C  Cg  Fs    L  H+r+H
  PH01000054G1270 107 HECAVCGLEFSMGQALGGHMRRH 129
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.91E-55885No hitNo description
PfamPF139128.2E-116083IPR007087Zinc finger, C2H2
PROSITE profilePS501579.9516188IPR007087Zinc finger, C2H2
SMARTSM003550.826183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.2E-4105132IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.89E-6105134No hitNo description
PfamPF139122.2E-11106131IPR007087Zinc finger, C2H2
SMARTSM003550.89107129IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.032107134IPR007087Zinc finger, C2H2
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MTLTREEAEE SKEMESLRVH ADALLSLSSP ASSTAPAGSG ISEPSTTTPV GRTALAAEGV  60
FECKTCSKRF PSFQALGGHR TGHTRLQARM LPHEPAAGAE RDRARVHECA VCGLEFSMGQ  120
ALGGHMRRHR GEATTSTVPV DASSSAAQPD IMPDLNYPPL EDGGDGHESS ADHSSEPQLL  180
NLLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000054G1270
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0981530.0FP098153.1 Phyllostachys edulis cDNA clone: bphyem115f16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817787.14e-75zinc finger protein ZAT12-like
TrEMBLA0A077RVZ21e-86A0A077RVZ2_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4T11e-86A0A446Q4T1_TRITD; Uncharacterized protein
STRINGBRADI2G54500.12e-69(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-23C2H2 family protein