PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000054G1500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 190aa    MW: 20133.1 Da    PI: 8.9075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000054G1500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00115173123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  PH01000054G1500 51 FECKTCNRQFPTFQALGGHRASH 73
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.32E-84973No hitNo description
PfamPF139121.2E-125075IPR007087Zinc finger, C2H2
SMARTSM003550.185173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.0555178IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
SuperFamilySSF576672.32E-8101128No hitNo description
PfamPF139122.3E-10105131IPR007087Zinc finger, C2H2
SMARTSM003550.25106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.723106133IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGKRGRGVWD AKMGGVDTAR VLMLLAQQYQ HGGVDVGAQP PMVRGVHDRV FECKTCNRQF  60
PTFQALGGHR ASHKRARQQH ALGGADAALC LGQRQPQQQP AKPRVHECPV CGLEFAIGQA  120
LGGHMRRHRA EVDAPNSKAA PEKACDVSGI CLDLNLTPSE NCAKCQNVVG LGAAGQGVHK  180
ALAMLDCSL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000054G1500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032313e-57AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11.
GenBankAP0149573e-57AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020183979.12e-73zinc finger protein ZAT12-like
TrEMBLA0A077RWX73e-75A0A077RWX7_WHEAT; Uncharacterized protein
TrEMBLA0A446Q4S73e-75A0A446Q4S7_TRITD; Uncharacterized protein
STRINGOPUNC01G35370.11e-75(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62822138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-29C2H2 family protein