PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000058G1000

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

SRS

Protein Properties

Length: 134aa MW: 13798.1 Da PI: 4.7557

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000058G1000	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	84	3.6e-26	12	63	103	154
DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +slP++v+++avf+cvrv+s+ddge+e+aYq+ v+i+GhvfkG+LydqG+++ PH01000058G1000 12 ESLPRHVRAPAVFKCVRVTSIDDGEDEYAYQAMVTINGHVFKGFLYDQGIDD 63 67***********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.2E-23	11	62	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	2.2E-28	14	61	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MATYYVYASF RESLPRHVRA PAVFKCVRVT SIDDGEDEYA YQAMVTINGH VFKGFLYDQG 60 IDDGRLAATS NDDSTAGVPN ISELHLGGAS VSGPGGNAVR EGGSSMLPSD LYGGSGGGGP 120 HVLGGSSYGN TMN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000058G1000

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-100	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691020.1	2e-66	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1, partial
Swissprot	Q94CK9	4e-24	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A0D3EYS8	8e-63	A0A0D3EYS8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N7R3	7e-63	A0A0E0N7R3_ORYRU; Uncharacterized protein
TrEMBL	I1NVC0	8e-63	I1NVC0_ORYGL; Uncharacterized protein
STRING	ORUFI01G47660.1	1e-63	(Oryza rufipogon)
STRING	ORGLA01G0381000.1	1e-63	(Oryza glaberrima)
STRING	OBART01G44230.1	1e-63	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3579	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	9e-27	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]