PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000059G1030
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family TALE
Protein Properties Length: 615aa    MW: 66458.4 Da    PI: 7.1261
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000059G1030genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-093804171954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  PH01000059G1030 380 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 417
                      664459******************************88 PP
2BELL71.21.8e-232593131872
             BELL  18 eVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      eVd+rY++y+eq++++ +sFeavag  ++++Yt+lA+++iSrhFr+L+d ++ q+
  PH01000059G1030 259 EVDRRYRRYCEQMRALTGSFEAVAGDRASAVYTKLASRTISRHFRSLRDGVVVQL 313
                      8**************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-19127311IPR006563POX domain
PfamPF075261.9E-36134309IPR006563POX domain
PROSITE profilePS5007112.05358421IPR001356Homeobox domain
CDDcd000865.92E-12361422No hitNo description
SMARTSM003896.6E-9361425IPR001356Homeobox domain
SuperFamilySSF466891.88E-17362429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-28364427IPR009057Homeodomain-like
PfamPF059208.1E-18378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MAHDPSLGYA DYFAAGGGAS TLVPEVDAGE PELYGLHHQP GVEMFGVRGF MPASMDAASA  60
QSKAAVGDAD DSSTIQFVLG EQQHRQLSQA PLSLSLHRPA EAASLMLHHQ LRGLDAPRQH  120
QQPAAWLHGA WHPRGSRFLL PTQQLLQEFC SLPLESTNNL PKPPKQAQQD GGGSSSSASW  180
TPSTQIQTMD ATELQRLKAK LYTMLEEATG SSIMAFPRRV AGSLGQAQGV HRWVQLGRCR  240
VLARGYSTTR SLVLGTRVEV DRRYRRYCEQ MRALTGSFEA VAGDRASAVY TKLASRTISR  300
HFRSLRDGVV VQLQAVHKAL GEKDTAVPGM TKGETPRLRA LDQCLRQHKA YQAGMLESHP  360
WRPQRGLPER AVTILRAWLF EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK  420
PMVEEMYSEE MKDQEGSGQS QASNLQNPNT SSYTFEERGG DEDGGGEKKP TRAQLMHDAG  480
SLASVVSIGS GAGRIDHQSI NFGMMDHLDF DAYEAAGEQG FSGGVSLTLG LQQHADSHGA  540
VNVAFAAAPS SAAQGGATEL LFMAGEQQMG GAGGGVHSAE GHPGQFGAGM EGDPASHYRR  600
LSATGFQLLH DLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-16367424158Homeobox protein Meis1
4xrs_B1e-16367424158Homeobox protein Meis1
5bng_A1e-16367425159Homeobox protein Meis2
5bng_B1e-16367425159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000059G1030
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680290.0AK068029.1 Oryza sativa Japonica Group cDNA clone:J013134A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614125.10.0BEL1-like homeodomain protein 4
TrEMBLA0A0E0R1T50.0A0A0E0R1T5_ORYRU; Uncharacterized protein
STRINGORUFI10G17910.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38143764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-79TALE family protein