PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000059G1450
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 280aa    MW: 30461.7 Da    PI: 10.3132
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000059G1450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.53.1e-2938144199
                      EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 
                      f+kv tpsdv+k++rlv+pk++ae +        +    ++  l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F +  
  PH01000059G1450  38 FEKVVTPSDVGKLNRLVVPKQHAECYfpldaraaN--GGKGLVLSFEDRTGKAWRFRYSYWNSSQSYVMTKGWSRFVKEKRLGAGDTVSFGRGv 129
                      99*********************888**9999652..346779***********************************************9655 PP

                      SS.SEE..EEEEE-S CS
               B3  86 gr.sefelvvkvfrk 99 
                      g+  +++l++ ++r+
  PH01000059G1450 130 GEaARGRLFIDFRRR 144
                      888999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-3833145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-2935128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-2436125No hitNo description
PROSITE profilePS5086313.9338145IPR003340B3 DNA binding domain
PfamPF023621.7E-2638144IPR003340B3 DNA binding domain
SMARTSM010193.6E-2138145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEFTPIAHSA AGVEDSERAC DAAAAWAAGP AVEKEHMFEK VVTPSDVGKL NRLVVPKQHA  60
ECYFPLDARA ANGGKGLVLS FEDRTGKAWR FRYSYWNSSQ SYVMTKGWSR FVKEKRLGAG  120
DTVSFGRGVG EAARGRLFID FRRRRQDFSA IVFPPPAPSQ RLPLPSVPLR PWRDYSTYGS  180
ASGSNRHVLF LRPQVPAAVV LKSVPVRLAA SAVEATRSKR VRLFGVNFDC PVMESMENGE  240
DGARKTWMAA STLLQLPSPS SSTSSSTAGK GMCSLDLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-54331443113B3 domain-containing transcription factor NGA1
5os9_B1e-54331443113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000059G1450
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983810.11e-118putative B3 domain-containing protein Os10g0537100
SwissprotQ8LNN81e-114Y1071_ORYSJ; Putative B3 domain-containing protein Os10g0537100
TrEMBLA0A0E0MAR91e-123A0A0E0MAR9_ORYPU; Uncharacterized protein
STRINGOPUNC10G16940.11e-124(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.12e-51B3 family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]