PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000060G1600
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 1852aa    MW: 198992 Da    PI: 4.295
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000060G1600genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.24.9e-0717531776427
                       ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH    4 elCrffartGtCkyGdrCkFaHgp 27  
                       + C+ff  tG+C+ G++C F H++
  PH01000060G1600 1753 RVCKFFVDTGFCRKGEQCDFYHPQ 1776
                       57********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.76E-10489570IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-9514571IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.08E-18525570No hitNo description
SMARTSM002492.1E-8525571IPR001965Zinc finger, PHD-type
Gene3DG3DSA:1.10.245.102.0E-25741828IPR003121SWIB/MDM2 domain
SuperFamilySSF475927.63E-21744825IPR003121SWIB/MDM2 domain
SMARTSM001510.002744829IPR019835SWIB domain
PfamPF022013.2E-14751824IPR003121SWIB/MDM2 domain
PROSITE profilePS5136015.9018851027IPR004343Plus-3 domain
SMARTSM007192.1E-358851004IPR004343Plus-3 domain
SuperFamilySSF1590424.71E-248861024IPR004343Plus-3 domain
PfamPF031261.3E-16890982IPR004343Plus-3 domain
SuperFamilySSF552773.66E-1811951257IPR003169GYF domain
PROSITE profilePS5082915.64412051259IPR003169GYF domain
CDDcd000727.61E-1512051258No hitNo description
SMARTSM004444.1E-1812061261IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.7E-1712071258IPR003169GYF domain
PfamPF022134.3E-1312071250IPR003169GYF domain
SMARTSM003565.3E-617501776IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-417531775IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.71317541777IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1852 aa     Download sequence    Send to blast
MDDDDLAAAA AALDPVSPPP LQELEASPPA LPAENAVSTA GETLAVDPPV AAAAGDGEHV  60
SFDEEKVPVP YEDIPQEVDS AAADEQVPVA AEAVLVEAAS AAADEAHEDE GPVRGDANPA  120
PEGGVAQGDS LDGGPYISQV PLGVGGDAGA EIDDLAGEGT GIPAAVEAMP TTPDIVLEGD  180
GDGEALDGEG DKSDENSKAG GDDMVVMELV GVAEDSNPDD ITKADEPEED AGVGVQLDGI  240
NVAVDDPTEV GASLVGDDSD MVSNKGGDSF DDQTGQEIGD GTHDGADEDD GPRMDKNVPV  300
SDDGEGAQDE HGAQMDVVAT IVFNDVEAAL VKAGDDVAAE GTTMDTLAPI GDDYEEERVA  360
MAGDAATDEE GMQMDAVAMA RDDNEEKATG TAGVDATDED IHVDTIGLTG DDNEEKEVAT  420
AGDDDAEEGM QMDAVTTTGD EDEEDGMAGQ NVGEEADSVP EEAEIGMVGN DIPEVEAVQI  480
DEEDDDDEPP PLSRKGGGRR KRGRPSSKAQ AVAKPSVKRK DDEEVCFICF DGGDLVVCDR  540
RGCPKAYHPS CVNRDDEFFK SKGRWNCGVH SAFCNLDTLQ DNICDMSMLH TPMIIIEDVD  600
FDDKSSWWYL FKDYWLNLKT KLALTFEEIS AAKSQKNGSS LVIRDSELPD TNDEEEANSD  660
SSSGRHLESN SSKKRGRKRS KHAANEDSSK GKESTRKSTK RGLSGSRDAK NSTGRKVRKL  720
SKRASSSEHR PKESESVGTS TSSAEESSWA SKELLDFVAH MRNGDKSVLS QFDVQALLLE  780
YIKRNSLRDP RRKSQIVCDY LLRSLFGKAR VGHFEMLKLL ESHFLMSEVS PIDIDGNHGG  840
VVDPDSSQDA DGNSEASVVM SSEKRKKSRK YDQRVLQTNL DDYAAIDNHN ISLMYLRRNL  900
IEELIGDVDT FDEKVLGSFV RIRISGTGQR QDIYRLVQIV GTGTAAEYKC GKKTTDITLE  960
ILNLDKREVI TIDITSNQEF TELYLLSVCI RIEECKRLRQ SIKCGFIPRL TVGEVQDKAR  1020
VLQAVKVNDV LSKCVEKLQL LSTPEERARR LNEEPEIHAD PTMDPDYESP EEQEQDTERS  1080
SFNKSRGSSF RKESNPVSPG KGEGRNAAQR DSKTNWESNR NAWGESTTHI ESPLGRRSTF  1140
SPHGESSSYT GKSESPNVGA QTVKMEATTG NAPRGLPGVS SETLAANVGS GATTPASQSS  1200
VNESEKIWQY MDPSGKVQGP FSIVQLRKWN SSGYFPPSLK IWKSSEKQDD LILLSDALVG  1260
KFEKDLPPWE PPLGSSSLID KTYLRRNSDV GSRPRSDSLL EESTKAGEQT SKSAVPNRSQ  1320
SFSGRVGERH DYDTTNLGST MIQSGTQGYY GMQNSQAAYA TQQSLTGSWS ASSSQFGTTV  1380
HPITLSQPPM GGFSVGQNNA VAGNVGRLTP VPAAVTASAE IVNSQLQSQN QILSVLPQRD  1440
GTLADGNDLK LGEDASHGRM RSSGEDLGPL GAQPGAAQSN TQQLEAPADA RSQLSTDASN  1500
STMPSQLMSA PSAEPVQPLA TAVTGGDSQS SGWAMPAQVA NTSGQAQGAG NMNWGAALQG  1560
NASMGWGMMG QTNMNMSWGA PAQGAASYNM GLTMPTQPNA VPNMGWVTPN PGNTDMNMIW  1620
AATQGQGTPN AATMMGAQMQ GVVMAPWGTI AQGNANSYPG WGTQVGNMNQ NIGWGSPMQG  1680
NPNSNPGNVS GQGNNNMNWN SPNGNPNWNN QQRDTGGRHS GHGDDLNGGD SGGRSWRSQS  1740
GGDGGSWGHT WGRVCKFFVD TGFCRKGEQC DFYHPQTNDG YPSRNDRHFD RQTSSNERRY  1800
DRHNERNDRQ FDRQPSGNER HYDRHDDRHS DRDNDRNDDR QADRSESRER R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000060G1600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611529.10.0zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0B5N60.0A0A0E0B5N6_9ORYZ; Uncharacterized protein
STRINGOGLUM09G17910.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP717938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-124nucleic acid binding;zinc ion binding;DNA binding