PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000060G1850

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

HD-ZIP

Protein Properties

Length: 233aa MW: 25701.4 Da PI: 5.442

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000060G1850	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	25	77	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F+ + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k PH01000060G1850 25 KKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 77 456*************************************************9 PP
2	HD-ZIP_I/II	123.3	1.2e-39	24	115	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+r+s+eq+k+LE++F +++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal + e+L+ke+++L ++l++ PH01000060G1850 24 RKKRFSEEQIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCNYESLKKEKHALLKQLEK 115 8**************************************************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-19	11	81	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-20	16	86	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.362	19	79	IPR001356	Homeobox domain
SMART	SM00389	5.8E-17	22	83	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-17	25	77	IPR001356	Homeobox domain
CDD	cd00086	1.66E-16	28	80	No hit	No description
PRINTS	PR00031	7.4E-6	50	59	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	54	77	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.4E-6	59	75	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.1E-13	79	121	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MGGEEDGEWM MDVPGGKGGK GGDRKKRFSE EQIKSLESMF ATQTKLEPRQ KLQLARELGL 60 QPRQVAIWFQ NKRARWKSKQ LEREYSALRD DYDALLCNYE SLKKEKHALL KQLEKLAEKL 120 QEPRGKYGDN ADAAGAGDDV RSGVAGLKEE FVDPGAALYS AEGGGGKFSH FCDDDAGLFL 180 RPSSQPSHGA AGFTASGPAE HQSSFQFHSS WPSSAEQTCS SSQWWEFESL SE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000060G1850

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001183573.1	1e-121	uncharacterized protein LOC100502166
Swissprot	Q651Z5	1e-106	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	1e-106	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	A0A3L6DV53	1e-119	A0A3L6DV53_MAIZE; Homeobox-leucine zipper protein HOX6
TrEMBL	C4J8W1	1e-119	C4J8W1_MAIZE; Homeobox-leucine zipper protein ATHB-12
STRING	GRMZM2G041462_P01	1e-120	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	4e-34	homeobox 7

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]