PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PH01000063G0560

Organism

Phyllostachys heterocycla

Taxonomic ID

38705

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys

Family

NAC

Protein Properties

Length: 250aa MW: 27052.4 Da PI: 10.1744

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PH01000063G0560	genome	ICBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.2	1.1e-38	22	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkya..tgk.rknratksgyWkatgkdk 90 lppGfrFhPtdeelvv+yL++k+ +++l++ vi+ + d+ k++PwdLp a+e e yfFs ++ ++ +g+ ++r + sgyWkatgk+k PH01000063G0560 22 LPPGFRFHPTDEELVVQYLRRKALSSPLPA-AVIPVIhDVAKLDPWDLP---GASEGEKYFFSLQQAPARgrKGSgGHRRRAGSGYWKATGKEK 111 79*************************9.8899998*******...34567999988766544333234446799******* PP NAM 91 evlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+ + k+++vg+k+ Lvf++g+ ++ +tdWvmheyrl PH01000063G0560 112 PVFLQgsgcdgggKRQVVGVKTALVFHRGKPSS--RTDWVMHEYRL 155 9999999887888******988877..*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-44	14	188	IPR003441	NAC domain
PROSITE profile	PS51005	45.865	22	188	IPR003441	NAC domain
Pfam	PF02365	8.6E-25	23	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MERPVAAAVR HVAAAVQALR QLPPGFRFHP TDEELVVQYL RRKALSSPLP AAVIPVIHDV 60 AKLDPWDLPG ASEGEKYFFS LQQAPARGRK GSGGHRRRAG SGYWKATGKE KPVFLQGSGC 120 DGGGKRQVVG VKTALVFHRG KPSSRTDWVM HEYRLATVPG GVAEQNKSAS NNCVAQPGEW 180 VVCRIFLKNR SRRPTGEADS QTPGSHATVH RTVQHREDAG LHQPLLSSSS SSSCVTDISD 240 QEEVSSSQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-35	22	191	17	168	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-35	22	191	17	168	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-35	22	191	17	168	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-35	22	191	17	168	NO APICAL MERISTEM PROTEIN
3swm_A	7e-35	22	191	20	171	NAC domain-containing protein 19
3swm_B	7e-35	22	191	20	171	NAC domain-containing protein 19
3swm_C	7e-35	22	191	20	171	NAC domain-containing protein 19
3swm_D	7e-35	22	191	20	171	NAC domain-containing protein 19
3swp_A	7e-35	22	191	20	171	NAC domain-containing protein 19
3swp_B	7e-35	22	191	20	171	NAC domain-containing protein 19
3swp_C	7e-35	22	191	20	171	NAC domain-containing protein 19
3swp_D	7e-35	22	191	20	171	NAC domain-containing protein 19
4dul_A	7e-35	22	191	17	168	NAC domain-containing protein 19
4dul_B	7e-35	22	191	17	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PH01000063G0560

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP096302	0.0	FP096302.1 Phyllostachys edulis cDNA clone: bphylf003f07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957303.1	9e-98	NAC domain-containing protein 41
Swissprot	O22798	3e-50	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	K3ZWG0	2e-96	K3ZWG0_SETIT; Uncharacterized protein
STRING	Si030942m	4e-97	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12805	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	7e-46	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]