PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000065G2010
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 87aa    MW: 9575.83 Da    PI: 8.5247
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000065G2010genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-0814531554
                     HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +iN+ +++L++llP+a + +s   s    L++++ YIksL
  PH01000065G2010 14 EINELISKLQSLLPSAGRRGSSQASTTKLLKETCSYIKSL 53
                     7**************97888888****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.75153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.11E-10376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-91370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-61453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MSSRRSRASI SEEEINELIS KLQSLLPSAG RRGSSQASTT KLLKETCSYI KSLHREVDDL  60
SDRLSDLMAT MDHNSPGAEI IRSLLR*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000065G2010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0716016e-97AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence.
GenBankCT8322846e-97CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148242.11e-48uncharacterized protein LOC100281850
SwissprotA2X9L86e-45ILI5_ORYSI; Transcription factor ILI5
SwissprotQ6YUX06e-45ILI5_ORYSJ; Transcription factor ILI5
TrEMBLA0A3L6DB693e-47A0A3L6DB69_MAIZE; Transcription factor ILI5
TrEMBLB6SZJ43e-47B6SZJ4_MAIZE; DNA binding protein
STRINGOPUNC02G30020.11e-47(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92838145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.13e-24bHLH family protein