PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000068G1560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 157aa    MW: 17330.6 Da    PI: 10.2411
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000068G1560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-05801181654
                      HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      i +  ++L+++lP++ + ++ + s a  L++++ YI+sL
  PH01000068G1560  80 IAELVSRLQSVLPESRRRNASRASAAKLLKETCSYIRSL 118
                      5667789*******77999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.76564118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-778137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-779134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDYPFATVTT YNSQLQSYTG SKSRRVGVGE RMIHTYIASP GRNRKKQSRR GAVLITEESC  60
SACACVRMSR RRGQISDEEI AELVSRLQSV LPESRRRNAS RASAAKLLKE TCSYIRSLHR  120
EVHDLSDRLA QLMASVDGDS PQADIIRSLL SSGPPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000068G1560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0966370.0FP096637.1 Phyllostachys edulis cDNA clone: bphyst005l01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010917019.13e-37transcription factor ILI5
TrEMBLA0A2I0VAG79e-35A0A2I0VAG7_9ASPA; Transcription factor bHLH135
STRINGGSMUA_Achr5P17560_0013e-35(Musa acuminata)
STRINGGSMUA_Achr9P09010_0012e-35(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.11e-22bHLH family protein