PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000068G1610
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 599aa    MW: 65882.8 Da    PI: 4.7231
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000068G1610genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.3e-071161461446
                      HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +a k lG++ W+ Ia+ +  gRt++ +k+r+ +
  PH01000068G1610 116 QAQKVLGNK-WTEIAKVVS-GRTDNAVKNRFST 146
                      78899****.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-1669151IPR009057Homeodomain-like
PROSITE profilePS512949.85874152IPR017930Myb domain
SMARTSM007173.4E-478150IPR001005SANT/Myb domain
CDDcd001676.57E-582147No hitNo description
SuperFamilySSF466895.93E-8116155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MATGPDLSSP SASIAAVPAA KKDRHIVSWS AELDNYSGTI QGQDSQTVQE KSARKVGGPG  60
KRTCYCVRWY NYLNSECKKG GWSREEDMLL CELFVLAVQP SQCQMIYSSL RGIAMQAQKV  120
LGNKWTEIAK VVSGRTDNAV KNRFSTLCKK RTKDEELFKE NGALCSNANA KRVLTQTGRL  180
TSGATGSSPP LKQMRSCKPD FKENIACNMR LFGQEKSTQQ DSRQPLAIIS PNNQDNANIE  240
ETQTFVAKTT TQQLFGGEQN CVKHEGNFLK KDDPKFATLL QQADLLCSLA TKVNTENTSQ  300
SMDEAWQKLQ HHLVKKDDND MSESSMSGIA SLLEELDDLI VDPYENEEED EQKSREQNGQ  360
IDVEHSNGPS QTSMEVTSQM APDQKIDDCP VDKSTEDNNL CRNVLSSSLD PCPGAEIPAS  420
VNLSEAAEDS RLQCMEYTSP AHTVLQAKAD AEIPESENFS EIDKDCRLQC MECTSPAHTV  480
LQAKADAERS ASENFSKVAE DRRLQCIEFN SPARTIIQAK AGAEIPTSEN FSEVAEDSKL  540
PCMEFTSPAH TVPTFQPYTD DMPTPKITAS VCMGSNPKPA MLLSMYILAA LQLVISRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-136815148107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000068G1610
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235205.10.0transcription factor MYB124 isoform X1
TrEMBLA0A0E0LNL60.0A0A0E0LNL6_ORYPU; Uncharacterized protein
STRINGOPUNC07G21540.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89033847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.12e-59myb domain protein 88