PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000069G0560
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 103aa    MW: 11145.9 Da    PI: 9.7899
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000069G0560genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-141859247
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                     +y+GVr ++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++
  PH01000069G0560 18 RYRGVRKRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARACE 59
                     59*******.7*********83...36**********888888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-91859IPR001471AP2/ERF domain
SMARTSM003802.6E-161876IPR001471AP2/ERF domain
CDDcd000182.96E-181857No hitNo description
Gene3DG3DSA:3.30.730.107.5E-201864IPR001471AP2/ERF domain
PROSITE profilePS5103216.0281875IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-141862IPR016177DNA-binding domain
PRINTSPR003673.5E-81930IPR001471AP2/ERF domain
PRINTSPR003673.5E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MRKAKPPQPQ PSPSPEIRYR GVRKRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARACEQ  60
ENLSFSLSFS GISNDVAAVV SLIGKCLFFQ AADAICFFAL LI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000069G0560
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0695194e-61BT069519.1 Zea mays full-length cDNA clone ZM_BFb0155J08 mRNA, complete cds.
GenBankKJ7275494e-61KJ727549.1 Zea mays clone pUT5409 AP2-EREBP transcription factor (EREB19) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641022.11e-25ethylene-responsive transcription factor 3
TrEMBLA0A1E5W6B31e-31A0A1E5W6B3_9POAL; Uncharacterized protein
STRINGORUFI06G27450.12e-25(Oryza rufipogon)
STRINGOBART06G25530.14e-25(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.12e-20ethylene responsive element binding factor 4