PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000069G1480
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 119aa    MW: 13659.6 Da    PI: 11.2881
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000069G1480genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.0003295117628
                      HHHHHHHHHHHHHHHHHHHCTSC CS
              HLH   6 nerErrRRdriNsafeeLrellP 28 
                      + rErrR++r  +++ +Lr  lP
  PH01000069G1480  95 KLRERRRVNRFSEWLPQLRHRLP 117
                      679****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813831.7E-112070IPR001810F-box domain
Gene3DG3DSA:1.20.1280.504.0E-82768No hitNo description
PfamPF006466.0E-63276IPR001810F-box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MALEFDGDGS AHRRRADEGR EQGESSAVKV DSISALPEEL RLHILTFLPL KFAIRTAALS  60
KAWRGLWERR WPDPSSLHIN LVPGDSSEQL LASLKLRERR RVNRFSEWLP QLRHRLPR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000069G1480
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1000261e-132FP100026.1 Phyllostachys edulis cDNA clone: bphylf061f02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237537.15e-23uncharacterized protein LOC100841457
TrEMBLI1IK981e-21I1IK98_BRADI; Uncharacterized protein
STRINGBRADI4G13350.12e-22(Brachypodium distachyon)