PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000071G1510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 254aa    MW: 26334.8 Da    PI: 7.8025
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000071G1510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.54.7e-4331129199
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                      +CaaCk+lrrkC++dCv+apyfp ++p+kf  vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+v+vi+ lq++l+ql+++l
  PH01000071G1510  31 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAVISILQRNLRQLQQDL 124
                      7********************************************************************************************* PP

           DUF260  95 allke 99 
                      a++k 
  PH01000071G1510 125 ARAKY 129
                      99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.37930131IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-4231127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MASSSVPAPL GSVIAISSSA ENSAVCGTGS PCAACKFLRR KCQPDCVFAP YFPPDNPQKF  60
VHVHRVFGAS NVTKLLNELH PYQREDAVNS LAYEADMRLR DPVYGCVAVI SILQRNLRQL  120
QQDLARAKYE LSKYQAAAAA ATGPNGPQAI AEFIGNTVPN GTQSFINVGH SVALGSIGGA  180
AGFGQEQFAA MQMMSRSYEG DPIARLGVNG GYEFGYSTAL AGAGSVSGLG TLIGAPFLKS  240
GIAGSDERPG AGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-53271347114LOB family transfactor Ramosa2.1
5ly0_B1e-53271347114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
UniProtNegative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000071G1510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817833.11e-144LOB domain-containing protein 6
RefseqXP_025817835.11e-144LOB domain-containing protein 6
SwissprotA2WXT01e-139LBD6_ORYSI; LOB domain-containing protein 6
SwissprotQ8LQH41e-139LBD6_ORYSJ; LOB domain-containing protein 6
TrEMBLA0A2S3HPE21e-143A0A2S3HPE2_9POAL; Uncharacterized protein
TrEMBLA0A2T7DDD61e-143A0A2T7DDD6_9POAL; Uncharacterized protein
TrEMBLA0A3L6RGB01e-143A0A3L6RGB0_PANMI; LOB domain-containing protein 6
STRINGPavir.Ea03589.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.41e-56LBD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]