PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000072G0530
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 237aa    MW: 25694.4 Da    PI: 9.5519
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000072G0530genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26070.82.8e-2210818227101
           DUF260  27 pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                      ++++a+vh+lFGasnv kll+++p   r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ l+ +l++l+++l
  PH01000072G0530 108 AAQLAAVHRLFGASNVAKLLSRVPVALRRDTARTVCYEAQARIADPVYGSVGTILALQHQVALLQGQLSVLRSQL 182
                      67899****************************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF821994.58E-141063No hitNo description
Gene3DG3DSA:2.170.270.102.4E-141163No hitNo description
PROSITE profilePS5089111.162182IPR004883Lateral organ boundaries, LOB
PfamPF031957.7E-24107179IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAADPARRCG AAARLRVVRH LKKGWGLHAD EALRRGQFVC EYTGEFLTTE EAQRRQRLYD  60
ELASVATLQE ARRCRDDAAS WGGAGGGSVV RGLQVPAAAV RAGVRVRAAQ LAAVHRLFGA  120
SNVAKLLSRV PVALRRDTAR TVCYEAQARI ADPVYGSVGT ILALQHQVAL LQGQLSVLRS  180
QLFNCRLALA STHPDIEHFV VLQPAYAVAL AASQMVNYND LPQAVDFMDV EPQLRD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-1611018339112LOB family transfactor Ramosa2.1
5ly0_B3e-1611018339112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000072G0530
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2424688e-71AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151201.19e-72LOB domain-containing protein 20-like
TrEMBLA0A3B6GWE77e-71A0A3B6GWE7_WHEAT; Uncharacterized protein
STRINGBRADI2G51310.15e-70(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.14e-25LOB domain-containing protein 20