PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000073G0850
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 212aa    MW: 21512.1 Da    PI: 8.5903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000073G0850genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014127149123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++C ++F++   L  H r+H
  PH01000073G0850 127 HRCSICLRTFPSGQALGGHKRLH 149
                      79*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0637597IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-137599IPR007087Zinc finger, C2H2
PROSITE profilePS501579.80675102IPR007087Zinc finger, C2H2
SuperFamilySSF576672.11E-775149No hitNo description
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
PfamPF139121.2E-12126151IPR007087Zinc finger, C2H2
SMARTSM003550.27127149IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162127149IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDSWPCGGRR SRRRGDGGGG GDFGGAESEE YLALCLLMLA RGVRGEVEDG GGFGGVKSVG  60
AAAKTKAKES QQQGYECSVC GKVYGSYQAL GGHKTSHRKP PTPHPAVAVG DEASGGSGSG  120
SGEGKVHRCS ICLRTFPSGQ ALGGHKRLHY EGGAAAEGIK DKEAVKTKAA AAAAVLKDFD  180
LNLPAVATTL GDEAESAPPD AKRARTMLLV V*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000073G0850
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015647209.11e-72zinc finger protein 1
TrEMBLA0A0E0I3093e-74A0A0E0I309_ORYNI; Uncharacterized protein
STRINGONIVA07G18980.15e-75(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.15e-28C2H2 family protein