PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000073G0920
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family LBD
Protein Properties Length: 215aa    MW: 22717.8 Da    PI: 7.9417
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000073G0920genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.82.2e-302103197
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C++ Cvl+p++     +++q +++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA  r+ +Pv+Gavg++++++++l+q
  PH01000073G0920   2 SCNGCRVLRKGCSEACVLRPCLqwievAEAQGHATVFVAKFFGRAGLMSFLTAVPEPQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLCQ 95 
                      6*********************9999888899************************************************************** PP

           DUF260  90 lkaelall 97 
                      +++e++l+
  PH01000073G0920  96 AAVETVLR 103
                      **998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.0611107IPR004883Lateral organ boundaries, LOB
PfamPF031954.1E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEACVLR PCLQWIEVAE AQGHATVFVA KFFGRAGLMS FLTAVPEPQR  60
PAVFQSLLYE AAGRTINPVS GAVGLLWAGS WHLCQAAVET VLRGGGIGPL PELEGGVPAD  120
DTGGGRDLFA SSARRAVGCS MAKQVTTRKP WIPEAAAHGE EPSCDLGLWF SPGSPPAAGE  180
RRVHELRGVR DDDRRREGAR ASESFCLSSS VRAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000073G0920
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0698131e-139AK069813.1 Oryza sativa Japonica Group cDNA clone:J023030F23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958181.11e-92LOB domain-containing protein 37
SwissprotQ9FN112e-65LBD37_ARATH; LOB domain-containing protein 37
TrEMBLK3ZWM93e-91K3ZWM9_SETIT; Uncharacterized protein
STRINGSi031011m5e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40843675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.12e-62LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]