PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000076G0800
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family B3
Protein Properties Length: 725aa    MW: 82089 Da    PI: 5.682
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000076G0800genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.4e-15271121899
                      --HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  18 lpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +p +f+ ++        + + ++s ++tl++++g++W v+l  +k +g ++lt+GW +Fv++  L e +f++F++d+++ f  +v vf +
  PH01000076G0800  27 IPQDFLGHIpevelrtsDASVASSAKVTLKHPEGKTWVVQL--EKVDGCVFLTTGWPKFVEDSSLMEYEFLLFRYDKDMHF--MVLVFGR 112
                      5666664446555555555557999****************..999999***************************99999..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010195.6E-916113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-1725115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-1626115IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-1227112IPR003340B3 DNA binding domain
PROSITE profilePS5086312.2127113IPR003340B3 DNA binding domain
CDDcd100177.80E-1350110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MWSKNESKAS DCEHRFVLFN DILMYEIPQD FLGHIPEVEL RTSDASVASS AKVTLKHPEG  60
KTWVVQLEKV DGCVFLTTGW PKFVEDSSLM EYEFLLFRYD KDMHFMVLVF GRNACEKAIR  120
SSGSGAQATG SIEGKLPCDI FPSSGDKPTE TANSLTHSHS QIVTLQRSTQ GDEHISSQGF  180
PDLHEVHGSK DELETYLSSK GPMEDDKTKA IAEVMRILHV DKATADLFCA TLSLYKWNAD  240
AAAEDFDVCR GKPQIQSQFL KQKLVLQFDF VKRQLRRFFP PDDDCSATIP DSRNSSLEEP  300
NLSKPLQCDL TAVKRRRIGK LRRGSLRTPE TPRRSPRRLA RLKNSLDSTK NVLKERAEVI  360
ESSPASTIDQ AEDRAEQACL LYEKADNVLE GVHEQMIGSL SQDLKRLKPA CGEGGLSEGP  420
QHNHGENEQK LDQGNNVETS EQMERNAAET SESFMRRGCI ESLPTNSKVP SSSIINELCF  480
TWKPSEHANP LEKILLDIQR DNFSKTISHV QGIIWNRPSD LLTAAVIDAV LQKEILKWDM  540
CLEDRDAQRI VNALLEHAKK IKEMHNFNME TRKEEFSAKL QDQLKWQLKE LESAYTSLEL  600
DYKKATSDAN IAVSTLQEQK KKLQALQDDI KDLQQSLMMK EDEMQKLKHQ VAEHESVVQK  660
SLMERVRVKT VLKSYEQILE EVKDRLASTE LGSIDVDALV KVEMDNMSRE IELSKGSLLN  720
INFK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313317KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000076G0800
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614209.10.0B3 domain-containing protein Os03g0120900
SwissprotQ5JNA10.0Y1237_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBLA0A0D9YED30.0A0A0D9YED3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G33420.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132352630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.17e-12B3 family protein