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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PH01000077G0950 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
|
| Family |
GRAS |
| Protein Properties |
Length: 330aa MW: 35669.4 Da PI: 5.5571 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PH01000077G0950 | genome | ICBR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 342.4 | 7.8e-105 | 40 | 322 | 79 | 374 |
GRAS 79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
++++f+ +sP++kfsh+taNqaI ea+e++ervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g+ s e+le+tg+rL++fA++l
PH01000077G0950 40 LIHNVFNGISPFVKFSHFTANQAIQEAFERDERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLGA----SMEALEATGKRLSDFADTL 129
34567******************************************************************....******************* PP
GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
g+pfef + va+ +l++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++h s+sFl+rf+ea++yysa
PH01000077G0950 130 GLPFEFCP-VADMAGNLDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH-SGSFLARFVEAIHYYSA 215
********.7*************************9..999999999999....**********************.899************** PP
GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
lfdsl+a+++++s er++vE++ll+rei+nv++ g +r+ + + +++Wre+l ++GF+ ++l +aa+qa lll +++sdgy++ ee+g+l l
PH01000077G0950 216 LFDSLDASYSEDSPERHVVEQQLLSREIRNVLSVGGPARTGDVK-FGSWREKLAQSGFRVASLAGSAAAQAALLLGMFPSDGYTLVEENGALKL 308
**************************************999987.************************************************* PP
GRAS 361 gWkdrpLvsvSaWr 374
gWkd L+++SaWr
PH01000077G0950 309 GWKDLCLLTASAWR 322
*************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 330 aa
Download sequence Send
to blast |
MDVAAPAQAP EGAASTTTWV DGIIRDIIGS SGAAVSITQL IHNVFNGISP FVKFSHFTAN 60
QAIQEAFERD ERVHIIDLDI MQGLQWPGLF HILASRPGGP PRVRLTGLGA SMEALEATGK 120
RLSDFADTLG LPFEFCPVAD MAGNLDPEKL GVTRREAVAV HWLHHSLYDV TGSDSNTLWL 180
IQRLAPKVVT MVEQDLSHSG SFLARFVEAI HYYSALFDSL DASYSEDSPE RHVVEQQLLS 240
REIRNVLSVG GPARTGDVKF GSWREKLAQS GFRVASLAGS AAAQAALLLG MFPSDGYTLV 300
EENGALKLGW KDLCLLTASA WRPIQTSGR*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for cell division but not differentiation of the ground tissue. Regulates the radial organization of the shoot axial organs. Restricts SHR movment and sequesters it into the nucleus of the endodermis (By similarity). {ECO:0000250, ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP094510 | 0.0 | FP094510.1 Phyllostachys edulis cDNA clone: bphylf057n24, full insert sequence. |
