PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000080G0200
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 259aa    MW: 29096 Da    PI: 7.3468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000080G0200genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.8e-241055247
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                     rie+   rqvtfskRr g++KKAeEL vLCda+va+++fsstgkl 
  PH01000080G0200 10 RIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLS 55
                     8*******************************************95 PP
2K-box41.17.5e-15821343688
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                       ++ Ge+Le Ls++eLqq+e++Le +l+++  +K++ ++ qi+elq+k++ + 
  PH01000080G0200  82 LNMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDRQFMHQINELQQKKEYIA 134
                      689*********************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.876154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-24168IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-31160IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-21323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-241055IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-213859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.34154145IPR002487Transcription factor, K-box
PfamPF014861.4E-1083133IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MARERREIRR IESAAARQVT FSKRRRGLFK KAEELAVLCD ADVALVVFSS TGKLSHMNEI  60
IDKYSTHSKN LGKSDQQPSL DLNMRGEELE GLSVEELQQM EKNLEAGLQR VLCTKDRQFM  120
HQINELQQKK EYIAECKWVL WIHTGLNRMF LHWHAYASML HKRGHTAGRG EHALEKPSNK  180
IVYAFVARDK RTGTGQFPGS WPETMPQVPT AGMLVVADAE NLFTEDGQSS ESVMTALHSG  240
SSQDNDDGSD ISLKLGLP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000080G0200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN0366484e-76JN036648.1 Brachypodium distachyon VRT-2 mRNA, partial cds.
GenBankKF4693024e-76KF469302.1 Brachypodium distachyon MADS-box transcription factor 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167460.19e-92MADS-box transcription factor 22-like
SwissprotQ9XJ662e-68MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A446VNW42e-91A0A446VNW4_TRITD; Uncharacterized protein
STRINGTraes_6AL_A93C6F2FC.11e-89(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.22e-21MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]