PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000083G0320
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 282aa    MW: 31171.8 Da    PI: 4.5856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000083G0320genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-083670137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     r +WT+ E++++++a +++  + Wk+I +++g  +t 
  PH01000083G0320 36 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 70
                     789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-92372IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-43570IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-93571IPR006447Myb domain, plants
PfamPF002492.1E-63670IPR001005SANT/Myb domain
CDDcd001676.67E-53872No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MVSMMATTPH PLDSPAEGEG DELRRVRKPY TITRSRESWT EPEHDKFLEA LQLFDRDWKK  60
IEAYVGSKTV IQQLDLVRNV GAPAAPQVDL PQQASHIMEQ GCVITMDASA VATNSSANDA  120
FPSWDSGLAQ HFSPRHTQGV TNNCSSSVES QSGTWPTSEA IEQEIMLPAL RDVSASFLQY  180
CFMPTVDAVT RVAMPDFARV YNFLGSVFDP ETSGHLQRLR EMDPIDVETV VLLMKNLSLN  240
LTGPNFEAHG NEQMRDEYCC PHSSQGVRSW SDSGVSRSAE C*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000083G0320
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0939901e-103FP093990.1 Phyllostachys edulis cDNA clone: bphylf053n10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642931.11e-111protein REVEILLE 6
TrEMBLI1PYS21e-109I1PYS2_ORYGL; Uncharacterized protein
TrEMBLQ5VS691e-109Q5VS69_ORYSJ; Os06g0105800 protein
STRINGOMERI06G00320.11e-115(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-54MYB_related family protein