PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000086G0580
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C2H2
Protein Properties Length: 914aa    MW: 99020.7 Da    PI: 4.9696
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000086G0580genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029153173222
                      EETTTTEEESSHHHHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrHirt 22 
                       Cp Cgk++  + +Lk H +t
  PH01000086G0580 153 ACPRCGKRYAVQADLKAHAKT 173
                      6*****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.76E-5139174No hitNo description
Gene3DG3DSA:3.30.160.602.7E-5140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704152174IPR007087Zinc finger, C2H2
PROSITE profilePS5023617.977289441IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
SMARTSM002991.9E-8294437IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
PfamPF006371.5E-10336434IPR000547Clathrin, heavy chain/VPS, 7-fold repeat
SuperFamilySSF483716.91E-18344452IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006886Biological Processintracellular protein transport
GO:0006897Biological Processendocytosis
GO:0005774Cellular Componentvacuolar membrane
GO:0005794Cellular ComponentGolgi apparatus
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MPPNPTEPEQ AEAAPAPAPA KKKRNLPGTP GESTRFVFSF VGVGGGIVVG KACMVYVGLM  60
SGLCVLCACR SGRGGDRAVA GDADGDEPVR VRGVREGVPE GPEPAAPGAA PPRRRVYVCP  120
EPGCVHHSPA RALGDLTGIK KHFCRKHGEK LWACPRCGKR YAVQADLKAH AKTYGTCEYR  180
CDCGTLFTRY YFPLSFPSIP MVPWGRKKLA FLFDSSASVL AWFRRDSFVT HRTFSGTLVE  240
ETGRVLAVPA PPSPRPPDLE AEENVDKDRE KGDEEENENS AVAEEQQLVV AVVPNVDEPE  300
VVAEPTVDAK QEGAVNFALM MSQMEGGCPL DYNTITDLFL QVLETNLVTY PNVADAILAN  360
GMFSHYDRPR IAQLCEKGGL YLRALQHYTE LPDIKRIIVN THAIEPQALV EFFCTLSREW  420
ALECMKDLLL VNLRGNLQIV VQASHVYTDL QDSRAHSWPP GQQQLDLQHI RKHAARLWRK  480
FAIDQIYSKP WPREPEVVAE PTVDAKHEVE DDRDEDACFD EADPYKDAEL EDSNLPHNDT  540
PMLPCFLPPP SEAIGMDGSS SSCGAGSNAS NSIAPATTST FAGLFASVTT STTPQSRSLR  600
DLIGVDPTFL CLAIGAPSSL FPQTNASNPC TFAPPPAPHM SATALLQKAA EVGASQSSSS  660
FLKEFGLASS SSSSTPSKPP QGRFIDNSPP SKLPQGRFID NSAQQWHRQH NQLMEMEPGP  720
MLSGGLGLGL AYDSGNSGLP DLMMGPSPLF GPKPATLDFL GLGIGGTMDG STANGGLPAL  780
MVGGELDMGS AQAPSPWEEA KTKTNGRSIL IVSEKEQDEI GTHRVTWESY QSGALSQQKL  840
RENPAEVIFG ANTKNCVYGY SLITDETNDT RPVPFIRHVK FLSEETEEIE PVKISDPSRT  900
NLQFSWSDMT NVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xi4_H1e-28341447583689Clathrin heavy chain
1xi4_I1e-28341447583689Clathrin heavy chain
1xi5_A1e-28341447583689Clathrin heavy chain
1xi5_B1e-28341447583689Clathrin heavy chain
1xi5_C1e-28341447583689Clathrin heavy chain
1xi5_D1e-28341447583689Clathrin heavy chain
1xi5_E1e-28341447583689Clathrin heavy chain
1xi5_F1e-28341447583689Clathrin heavy chain
1xi5_G1e-28341447583689Clathrin heavy chain
1xi5_H1e-28341447583689Clathrin heavy chain
1xi5_I1e-28341447583689Clathrin heavy chain
3iyv_A1e-28341447583689Clathrin heavy chain
3iyv_B1e-28341447583689Clathrin heavy chain
3iyv_C1e-28341447583689Clathrin heavy chain
3iyv_D1e-28341447583689Clathrin heavy chain
3iyv_E1e-28341447583689Clathrin heavy chain
3iyv_F1e-28341447583689Clathrin heavy chain
3iyv_G1e-28341447583689Clathrin heavy chain
3iyv_H1e-28341447583689Clathrin heavy chain
3iyv_I1e-28341447583689Clathrin heavy chain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000086G0580
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0983990.0FP098399.1 Phyllostachys edulis cDNA clone: bphyem204a15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658739.11e-151PREDICTED: protein indeterminate-domain 1-like, partial
TrEMBLA0A0D9X0T31e-152A0A0D9X0T3_9ORYZ; Uncharacterized protein
STRINGLPERR07G17330.11e-153(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-39C2H2 family protein