PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000087G1380
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family C3H
Protein Properties Length: 676aa    MW: 76161.8 Da    PI: 5.0088
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000087G1380genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-077295327
                     S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     +++C +f++ G C  GdrC+F Hgp
  PH01000087G1380 72 MVPCYYFQK-GNCLKGDRCSFYHGP 95
                     789******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.3756996IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-56995IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.41E-57094IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-47195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-57395IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MEVDGTAGAG AAAGARPLTP EEEALRRNTD CVYFLASPLT CKKPIDGMLG APTPEIPAVS  60
SHYAAYNSGK QMVPCYYFQK GNCLKGDRCS FYHGPQSAGN NPPEQVAKVF SFPLEQPPTQ  120
KNDLLGTKES AQPNNSFPQG GPIIDGRSKM TVDWLTMNSA KTASAVTPTE PASNAVKSWP  180
KSEKVQNSMP AVKKSFTTSS GEDHPECYQN HIPVESDPMQ DWNQNYQMPP TDDLPQNSRE  240
ADEFLGESSP GFDVLVDNDA DAAAYLPDEE DFGRDMYPVE DYEYAPADFD IRAHHDRERF  300
NGMGEKGQIG QMYDGYERKR RRTSSERNMD RPFHSERRFL QRERDPVEMD GSDLRHRLRR  360
RINGSSSAIS PERNGERRRR DDHYRERAHD GHYTHRDRHQ GPRGSTLSSR LQGRIKLPGR  420
SPDRADTRSE KERDRRRPRD MLSPVRHMDF QGGRHREAGQ HQEKTRRRSS ELDSSARNAD  480
GQHSRRDVMD SLNFATRKNF GESRKANESV ESEASLDFEG PKPLSLILQR KREAAWGNGS  540
SAHNVKEDKS TEVSHRQQPG SLVEAEKEGY DNIISSEECK SGSGDEEYKE EGQIPVEGHG  600
QSSSHGDKLE VGDIIEVDPV GNQEADNYDQ REAESDYETI EGHDYKSEDE NAYQEDEEEF  660
EDEDDFARKV GVVFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317321RKRRR
2317322RKRRRT
3358379RRRINGSSSAISPERNGERRRR
4375380ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000087G1380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003580797.10.0zinc finger CCCH domain-containing protein 32
SwissprotQ0J9520.0C3H32_ORYSJ; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2K2CJA20.0A0A2K2CJA2_BRADI; Uncharacterized protein
STRINGBRADI5G25760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66043241
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]