PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000090G1130
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 174aa    MW: 19047.6 Da    PI: 4.9976
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000090G1130genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.9e-083582247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     g+WT eE + + +a +    +   +W+ +a++++  +t  ++++++ ++
  PH01000090G1130 35 GAWTMEENKVFEEALATIDRDapnRWEMVAQMLP-SKTVADVVNHYKDL 82
                     79*****************99*************.***********875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-63385IPR001005SANT/Myb domain
PROSITE profilePS500906.6793583IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.5E-43580IPR009057Homeodomain-like
PfamPF002492.4E-63582IPR001005SANT/Myb domain
SuperFamilySSF466894.93E-113589IPR009057Homeodomain-like
CDDcd001671.82E-53782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MAEAWMKVLP PPPPYFSGQP CWFLQDRRGG GGGAGAWTME ENKVFEEALA TIDRDAPNRW  60
EMVAQMLPSK TVADVVNHYK DLENDVGFIE AGLVPFPHYS SSSGFTLDWD GGDGAGGGAL  120
ADLKDFFMCR LPCRRCRSNK NPEQIHSKTS VAHTVTRDGL KAVVVDALIE LQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1732104678RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000090G1130
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182102.13e-56transcription factor DIVARICATA-like
SwissprotQ8S9H74e-27DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A287M1942e-57A0A287M194_HORVV; Uncharacterized protein
STRINGMLOC_9835.22e-57(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-24MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]