PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000091G1390
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family CAMTA
Protein Properties Length: 975aa    MW: 108638 Da    PI: 6.2052
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000091G1390genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1101.27.5e-322195276
             CG-1  2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvg 76
                     l+ +krwl+++ei++iL n++ ++++ e+++ p+sgsl+L++rk++ryfr+DG++w+kkkdgktv+E+hekLK +
  PH01000091G1390 21 LEAQKRWLRPTEICEILSNYKLFSIAPEPPNMPESGSLFLFDRKILRYFRRDGHNWRKKKDGKTVKEAHEKLKAH 95
                     5679*********************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143744.47416161IPR005559CG-1 DNA-binding domain
SMARTSM010763.4E-4219122IPR005559CG-1 DNA-binding domain
PfamPF038598.7E-272295IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.0E-7389478IPR013783Immunoglobulin-like fold
PfamPF018335.4E-6391474IPR002909IPT domain
SuperFamilySSF812961.15E-17391477IPR014756Immunoglobulin E-set
SuperFamilySSF484031.4E-16569684IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-17579685IPR020683Ankyrin repeat-containing domain
CDDcd002047.86E-13584682No hitNo description
PROSITE profilePS5029718.059590684IPR020683Ankyrin repeat-containing domain
PfamPF127965.0E-7596685IPR020683Ankyrin repeat-containing domain
SMARTSM002480.11623652IPR002110Ankyrin repeat
PROSITE profilePS500889.431623655IPR002110Ankyrin repeat
SMARTSM00248360662691IPR002110Ankyrin repeat
SuperFamilySSF525406.9E-9793848IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.045797819IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.791798827IPR000048IQ motif, EF-hand binding site
PfamPF006120.0052799818IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022820842IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.468821845IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-4823842IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 975 aa     Download sequence    Send to blast
MAETRKFLLP SQPPDISQIL LEAQKRWLRP TEICEILSNY KLFSIAPEPP NMPESGSLFL  60
FDRKILRYFR RDGHNWRKKK DGKTVKEAHE KLKAHLDGRL VDLISSGRDF THIVLVHYLE  120
VKGGKQSFNR AKEEIMQLSN ADSPSCSNSI TSQNQVAPQT MDAFESPISG HISEYEDTES  180
VSGYHGEMQL RAANLDSHSF THHDIARMFD DASTGLRDIS RTLFDSVPFD EPFTEYPTGL  240
TEPTFHSSFA TIEANNLDDS SCLETFTSEA LYTNNLSQRE ADALSFAGIS SSEVNGNRYT  300
EGSVKHPLLK QSSLDLFKIE SAGLKKHDSF SRWMSKELGE VVDLDIKSNS DTFWSSIETV  360
NVADGSSVPT NEQLDAYAVS PSLSQDQLFS ILDVSPSCAY IGSKTKVSVT GTFMANKEHV  420
DNCKWSCMFG DVEVPAEVLA DGTLNCHAPA HQSGRVPFYV TCSNRVACSE VREFEYRDSD  480
AQYMETSHSQ TNGINEMHLH IRLEKLLCLG PDDHQLLVLS SGNEKHELIN AINSLMLDEK  540
WSDQGSLSDE KEVCTARDQS LKKLVKEKLH YWLICKINDD GKGPNVLGKE GQGVIHLVAA  600
LGYDWAIRPI LVAGVNVNFR DAHGWTALHW AASCGRERTI GTLIANGAAA GALTDPTSDF  660
LSGRTPADLA SANGHKGIAG FLAESALTSH LSALTIKESK DSSVEEVCGL PVAEDLTETN  720
SAQLAGDDSH PESLKDSLSA VRKSTQAAAR IFQAFRVESF HRKKVVEYGD DDCGLSDERT  780
LSLVSLKNIK PGQHDTHLHS AAVRIQNKFR GWKGRKEFMI IRQRIVKIQA HVRGYQVRKN  840
YRKVVWSVGI VEKVILRWRR KRPGLRGFRP EKLLEGPSQT QPAKVEDEYD FLQDGRRQAE  900
ARLQRALARV HSMAQYPEAR EQYHRLTTCV AEMQQSRVMQ DEMLSEAAGA DGSDFMTGLE  960
DLICKDDAQM SAIW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000091G1390
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228546.10.0calmodulin-binding transcription activator 3 isoform X1
RefseqXP_010228547.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLI1H4X20.0I1H4X2_BRADI; Uncharacterized protein
STRINGBRADI1G60817.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1