PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000093G0670
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ARF
Protein Properties Length: 751aa    MW: 83276.6 Da    PI: 7.2816
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000093G0670genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-1026725199
                     ..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3 51 iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                     + + +++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  PH01000093G0670 26 SQTSQPKRHLLTTGWSIFVNAKRLVAGDSVLFI--WNDNNQLLLGIRRA 72
                     44778899*************************..7777778***9997 PP
2Auxin_resp119.82.1e-3997180183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaast+s F+++YnPras+seFv++++k++k+++ +++svGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  PH01000093G0670  97 AAHAASTNSRFTIFYNPRASPSEFVISLAKYVKTVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 180
                      79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-152586IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-82772IPR003340B3 DNA binding domain
SuperFamilySSF1019361.83E-1229100IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-62971No hitNo description
PROSITE profilePS508638.7413373IPR003340B3 DNA binding domain
PfamPF065074.5E-3497180IPR010525Auxin response factor
SuperFamilySSF542771.18E-7609696No hitNo description
PfamPF023093.5E-7614703IPR033389AUX/IAA domain
PROSITE profilePS5174522.2618702IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MPVVRRGRVP YPRSSDRTPT ATSTVSQTSQ PKRHLLTTGW SIFVNAKRLV AGDSVLFIWN  60
DNNQLLLGIR RANRPQTVMP SSVLSSDSMH IGLLAAAAHA ASTNSRFTIF YNPRASPSEF  120
VISLAKYVKT VYHTRISVGM RFRMLFETEE SSVRRYMGTI TGISDLDPVR WPNSHWRSVK  180
VGWDESTAGE RQPRVSLWEI EPLTTFPMYP SPFPLRLKRP WPTGLPSLYG GKEDDLTSSL  240
MWLRDGASPG FQSLNFSGLG MSPWMQPRLD SSLLGLQPDM YQTIAAAALQ NTPKQVSPAV  300
LQFQQPQNIV GRSALLSSQI LQQVQPQFQQ MYHPNINENT IQGHTLPEYL QQQFQRCQSF  360
NEQKPQLQPQ QQESHHHQQS QCVQRPQHQY MQQQKHLPNF QSVPNALSAF SQLSSTTESS  420
PSALQTVSAF SQQQNFPDTN IISLSPSNVS SMHNTLRPYP SEAASNLPAV PRTTPVPVSD  480
PWSSKRVAVE SVIPSRHHVI SSQIEQLDLA HSNIPQSCAL APLPGRECLV DQDGSSDPQN  540
HLLFGVNIDS QSLLMQGGIP SLQNDNGSST IPFSTSDFLS PSQNDFPLNQ ALTSPGCLGE  600
SGYVPCSENS DQVNRPPATF VKVCKTGTVG RLLDITRFSS YHELRSEVGR LFGLEGQLED  660
PLRSGWQLVF VDREDDVLLV GDDPWQEFVN SVSCIKILSL QEVQQMGKQG IELLSSAPAR  720
RLGNSCDNYV SRQESRSLST GIASVGSVEF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-6830201217388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000093G0670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6PJ020.0A0A3B6PJ02_WHEAT; Auxin response factor
TrEMBLA0A3B6PJ820.0A0A3B6PJ82_WHEAT; Auxin response factor
TrEMBLA0A446W6P20.0A0A446W6P2_TRITD; Auxin response factor
TrEMBLA0A446W6S80.0A0A446W6S8_TRITD; Auxin response factor
STRINGTraes_6BS_BD894AD26.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-149auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]