PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000093G1890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 187aa    MW: 19033.2 Da    PI: 8.7566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000093G1890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-191868256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +gr++AeIrdp    k++ ++lg+f++ae Aa+a++aa+++l+g+
  PH01000093G1890 18 KYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRGA 68
                     8********.7*********83...36*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-211875IPR016177DNA-binding domain
PfamPF008474.6E-121867IPR001471AP2/ERF domain
PROSITE profilePS5103222.0491875IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-291876IPR001471AP2/ERF domain
SMARTSM003807.8E-331881IPR001471AP2/ERF domain
CDDcd000182.38E-161875No hitNo description
PRINTSPR003677.5E-81930IPR001471AP2/ERF domain
PRINTSPR003677.5E-84157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRRARLAPAL APAGAEIKYR GVRRRPSGRY AAEIRDPAKK TPIWLGTFDS AEAAARAYDA  60
AARSLRGAAA RTNFPSAASS SAARVPSVHP AATSSHSSTV ESWSGGASAA GVLRAAATAR  120
GGAPVAEEDC RSYCGSSSSV LCEEGASGAG GDEAAAPRCS PLPFDLNLPA GAADEMDWRC  180
DTLLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-2018761473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000093G1890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650356e-68AK365035.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H02.
GenBankJN6811936e-68JN681193.1 Hordeum vulgare subsp. vulgare ethylene responsive transcription factor 4 (ERF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801489.16e-73ethylene-responsive transcription factor 3-like
TrEMBLA0A3L6R0S34e-70A0A3L6R0S3_PANMI; Ethylene-responsive transcription factor 3
STRINGGRMZM2G322672_P015e-63(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61022347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.13e-14ethylene response factor 8