PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000107G0940
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family HB-other
Protein Properties Length: 301aa    MW: 33735.2 Da    PI: 6.0919
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000107G0940genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-072502832154
                      HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      k +yp+++++++L +++gL+ +q+ +WF N+R +
  PH01000107G0940 250 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 283
                      469*****************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-143882IPR005540KNOX1
PfamPF037901.8E-134080IPR005540KNOX1
SMARTSM012561.2E-2193148IPR005541KNOX2
PfamPF037911.9E-1696147IPR005541KNOX2
PROSITE profilePS5007111.693224287IPR001356Homeobox domain
SMARTSM003894.9E-10226291IPR001356Homeobox domain
SuperFamilySSF466895.13E-16226290IPR009057Homeodomain-like
CDDcd000862.00E-11227288No hitNo description
Gene3DG3DSA:1.10.10.604.5E-25231290IPR009057Homeodomain-like
PfamPF059201.0E-17244283IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDMGVGFTGS VGGRECSSSS ATAAAEAAAA AAEAEERQLL KGEIAVHPLC EQLAAAHVGC  60
LRVATPIDHL PLIDAQLAQS SGLLHSYAAH HRPFLSPHDK QELASFLSQY LMLLCSFREQ  120
LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTEATMS EDEEEPQIME GAMDMGSDAH  180
DMMGFGPLLM TDSERSLMER VRQELKIEFK QGFKSRIEDV REEILRKRRA GKLPGDTTTI  240
LKQWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ TSTLKSKRKR  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280299RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000107G0940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969710.0FP096971.1 Phyllostachys edulis cDNA clone: bphylf027b03, full insert sequence.
GenBankFP0993910.0FP099391.1 Phyllostachys edulis cDNA clone: bphylf024b20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV90.0A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGOPUNC03G01680.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-132KNOTTED-like homeobox of Arabidopsis thaliana 7