PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000110G0500
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family bHLH
Protein Properties Length: 416aa    MW: 44729.7 Da    PI: 6.6795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000110G0500genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.22.2e-16276322455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  PH01000110G0500 276 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKWLQ 322
                      6*************************8.....6****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.63E-19269326No hitNo description
Gene3DG3DSA:4.10.280.101.1E-20269329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-21270336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.33272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.3E-14276322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-19278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MNQFVPDWSS NMGDAFAPLG VEDDRLIELL WRNGHVVMQN QAPRKPPRPE KAVAMQEDEA  60
APWFQYPVDD SLEKDLFSEL FGQMPAAADA SGKVCKEECG VAAGSAVTAP QSRLMPPPRL  120
APHVAREKAG LGDVDDARSV SEVFTAQTSG EGSAATEAGE SSMLTIGSSI CGSNQVQTPG  180
AARARVVSYT ASDSALPPTD NGKDGAARDH HEATTVTSSS MRSRSGAANR GGGKRKQRDT  240
METGSPSEDV EFESAAVTCE PAQKLTTTKR RRAAEVHNLS ERRRRDRINE KMKALQELIP  300
HCNKTDKASM LDEAIEYLKW LQLQLQMMWM GGGMAPAPVM FPAGVHQYMQ RMGVGMGPPH  360
MASMPRMPPF MAPPAAVQSS PVSHMPAAVS MADLRALPLR RTPEAAVPHG STMQL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269284RRRAAEVHNLSERRRR
2280285ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000110G0500
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667631e-126AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297131e-126CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618074.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618075.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618076.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618077.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618078.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
RefseqXP_015618079.11e-156transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2
TrEMBLI1R7R61e-158I1R7R6_ORYGL; Uncharacterized protein
STRINGORGLA12G0157200.11e-159(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.32e-37phytochrome interacting factor 3-like 5