PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000110G0890
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family Trihelix
Protein Properties Length: 174aa    MW: 18903.8 Da    PI: 10.7163
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000110G0890genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.25e-0923654286
         trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                       ++s +qC++k+++l+kry+ +++++ +++++   ++p+f  l+
  PH01000110G0890 23 ATHKSGVQCRHKIKKLRKRYRVEQARSVGHSKG--PKWPFFLLLH 65
                     5799************************98544..47****8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-82466No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MASFSPCELL RRWWPLEELP PTATHKSGVQ CRHKIKKLRK RYRVEQARSV GHSKGPKWPF  60
FLLLHDLAGG GAPDPSPNPI VKINPKGPAA TTATESPSSV SSPSFEEAVR SRSLHGLISN  120
GGGGGELRFT IPKASRTKPV AREAEAMGEV ASALWAVGEG FLRMEERRLE MVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000110G0890
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0959651e-119FP095965.1 Phyllostachys edulis cDNA clone: bphylf045d08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003574347.13e-67trihelix transcription factor ASIL2
TrEMBLI1I6867e-66I1I686_BRADI; Uncharacterized protein
STRINGBRADI3G33630.11e-66(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-08sequence-specific DNA binding transcription factors