PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000110G1230
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MYB_related
Protein Properties Length: 295aa    MW: 32388.6 Da    PI: 9.1596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000110G1230genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.42.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g+W++I +          R+  ++k++w++
  PH01000110G1230  5 KQKWTAEEEAALKAGIAKHGAGRWRAILKDPEfsnilRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.107161IPR017930Myb domain
SuperFamilySSF466891.36E-15263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-13456IPR009057Homeodomain-like
SMARTSM007179.9E-9459IPR001005SANT/Myb domain
PfamPF002491.5E-8556IPR001005SANT/Myb domain
CDDcd116608.83E-20657No hitNo description
SMARTSM005261.9E-10114179IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467853.65E-15114193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-14116186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.429116184IPR005818Linker histone H1/H5, domain H15
PfamPF005383.2E-8121177IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI AKHGAGRWRA ILKDPEFSNI LRYRSNVDLK DKWRNMNVTV  60
NASGARDNRR TPTVKKPRYT PKYESHSTAV TTVASDGDDD IADFMSLATS SSTKRSLSRL  120
DNIIMEAVRS LNEPTGSYKT AITNYIEEQY WPPADFDHVL SSKLNELTAS GKLIKVNRKY  180
RIAPSSSFSE GRSSKMVLLE DIQREPMKVE RDDVATLTKS QVDSELARMR TMTAEEAAAA  240
AARAVAEAEA IMAEAEAAVK EAEAAEADAV AAQAFAEAAM LTLKNRTSAK LIIRA
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000110G1230
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1011640.0FP101164.1 Phyllostachys edulis cDNA clone: bphylf059a02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620817.11e-139single myb histone 6
RefseqXP_015620818.11e-139single myb histone 6
RefseqXP_025877961.11e-139single myb histone 6
SwissprotC0HIA31e-112SMH6_MAIZE; Single myb histone 6
TrEMBLA0A0E0MPJ71e-140A0A0E0MPJ7_ORYPU; Uncharacterized protein
STRINGOMERI12G14040.21e-139(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-66telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]