PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000111G0510
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family GRAS
Protein Properties Length: 585aa    MW: 65119.6 Da    PI: 4.6546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000111G0510genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4232.4e-1292165843374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lL++cA+a+s+ +  +aqa+++ l++++s +g+p qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P+++++++
  PH01000111G0510 216 KLLFDCATALSEYNIDEAQAIITDLRQMVSIQGEPSQRIAAYLVEGLAARIVASGKGIYKALTCKDPP---TLYQLSAMQILFEICPCFRLGFM 306
                      79*****************************************************************9...89999****************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +aN aIlea +geer+HiiDfdi+qG Q+++L+q L++ +++p +lRiTgv++pe++      l+ +g+rL+k+Ae +gv+fef++ v  ++ d
  PH01000111G0510 307 AANYAILEACKGEERLHIIDFDINQGSQYITLIQFLTNNANKPRHLRITGVDDPETVqrTVGGLKVIGQRLEKLAEDCGVSFEFRA-VGANIGD 399
                      *******************************************************99778889***********************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      +++ +L+++pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+ ++n+++Fl+rf e  +yysalfdsl+a+lpres +r
  PH01000111G0510 400 VTPAMLDCRPGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDGNTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDR 493
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      ++vEr++l+reivn++aceg +r+er e ++kWr+r+ +aGF p p+++++   +++ll+ +  d y+ ee++g l +gW +++L++ SaWr
  PH01000111G0510 494 MNVERQCLAREIVNILACEGPDRVERYEVAGKWRARMAMAGFVPCPFNSNVIGGIRSLLKAYC-DMYKFEEDHGGLHFGWGEKTLIVSSAWR 584
                      *************************************************************99.67*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.422188565IPR005202Transcription factor GRAS
PfamPF035148.4E-127216584IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MVMLKLNMGK DLKALQGIQD QFNQRKRVEL DLIWYSELVR SHRIFSLAGP ELFRYGPEPY  60
NSEDYGHTGF TEAPSAAFQN SFYNQQASLT PFHVTVDGRS PSVADNQSNS CSDAAKDSPV  120
VSNVSQPNSQ SISDNQSSEL GVEFDEDEMR LKLQELEHAL LDDGDDILFE ISQAGSINDE  180
WADPMKNVLL PNSPKESESS ISCAGSNNGE ARTPKKLLFD CATALSEYNI DEAQAIITDL  240
RQMVSIQGEP SQRIAAYLVE GLAARIVASG KGIYKALTCK DPPTLYQLSA MQILFEICPC  300
FRLGFMAANY AILEACKGEE RLHIIDFDIN QGSQYITLIQ FLTNNANKPR HLRITGVDDP  360
ETVQRTVGGL KVIGQRLEKL AEDCGVSFEF RAVGANIGDV TPAMLDCRPG EALVVNFAFQ  420
LHHLPDESVS IMNERDQLLR MVKGLQPKLV TLVEQDGNTN TAPFLTRFRE VYDYYSALFD  480
SLDATLPRES PDRMNVERQC LAREIVNILA CEGPDRVERY EVAGKWRARM AMAGFVPCPF  540
NSNVIGGIRS LLKAYCDMYK FEEDHGGLHF GWGEKTLIVS SAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6222158326378Protein SCARECROW
5b3h_A3e-6222158325377Protein SCARECROW
5b3h_D3e-6222158325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPH01000111G0510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0608330.0AK060833.1 Oryza sativa Japonica Group cDNA clone:001-034-C07, full insert sequence.
GenBankAK0674570.0AK067457.1 Oryza sativa Japonica Group cDNA clone:J013106L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564775.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLI1HU000.0I1HU00_BRADI; Uncharacterized protein
STRINGBRADI2G56910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]